Oncorhynchus kisutch (coho salmon): 109868319
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Entry
109868319 CDS
T09179
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03320
PPAR signaling pathway
oki04148
Efferocytosis
oki04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109868319
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
109868319
03320 PPAR signaling pathway
109868319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109868319
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
oki03310
]
109868319
Transcription factors [BR:
oki03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
109868319
Nuclear receptors [BR:
oki03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
109868319
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
109868319
NCBI-ProteinID:
XP_031658498
Ensembl:
ENSOKIG00005008370
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Position
LG23:complement(16501807..16665957)
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AA seq
535 aa
AA seq
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METKPFLSLGFLKPQCSLAPPPQRGRSGEACSCFTGMCHLHQRRISTGNTQRHLHIPSPS
APSWQTQHLGRHLYEINSSGQVTSSPLGSPTSHRGMHPSLLSPSSMGPSGSLHSPISTLS
SPMNGLGSPFSVISSPMGPHSMSSPGMGYGPSVSPQMFQLNSPMNSVSSSEDIKPPLGLN
GVMKVPAQPSQGCMPLSLTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCR
DNKDCLIDKRQRNRCQYCRYQKCLACGMKREVLLHTAVQEERQRAKERSENEVESTSGVN
EDMPVEKVLEAELAVEPKTETYIETNLGMPSNSPNDPVTNICQAADKQLFTLVEWAKRIP
HFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFD
RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASLEAYCKQK
YPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaacctttcttgtcattggggttcctgaagccccagtgctcactggctccg
cccccccagcgtggacgctcgggggaggcctgctcctgtttcaccggcatgtgtcacctc
caccagcgccggatatctacaggtaacactcaacgccatctccacatcccatcgccatct
gccccgtcatggcagactcagcacctgggaagacacctgtatgaaataaattcatcaggc
caggtgacctcatctcccctgggctctcccacatcccaccggggcatgcacccatccctg
ctcagcccgtcctccatggggccctcgggctccctgcactctcccatcagcaccctgagt
tctcccatgaacggcctgggctcgcccttctctgtcatcagctcccccatgggcccacac
tccatgtcctcgcccggcatgggctacggccccagtgtcagcccccagatgttccagctg
aactccccgatgaactcggtcagcagctcggaggacatcaagccccccctgggtctcaac
ggggtgatgaaggtgcccgcccagccctcacaagggtgcatgcccctctccctcaccaaa
cacatctgtgccatctgcggggaccgctcgtcaggtaaacactatggagtgtacagctgt
gagggctgtaaaggcttcttcaagaggacagtgaggaaggacctgacctacacctgccga
gacaacaaggactgtctgatcgacaagcgccagcgcaaccgctgccagtactgccgctac
cagaagtgtctggcctgtggaatgaagagagaagttttgttacacacagccgtccaggag
gagcgccagcgggccaaagagcgcagcgagaacgaggtggagtccaccagcggcgtcaac
gaggacatgcccgtggagaaggtcctggaggcagagctcgctgtggaacccaagaccgag
acctacatcgagaccaacctgggcatgccatccaactcgcccaacgacccagtgactaac
atctgtcaagcagccgacaagcagctcttcacgctggtggagtgggccaagaggatcccc
cacttctctgagttgcccctggacgaccaggtcattctcctacgagcagggtggaacgag
ctcctcatcgcatccttctcgcaccgttcgatagcggtgaaagatgggatcctcctggca
acagggctacacgtccatcgtaatagcgcccacagtgctggagtgggagccatctttgac
agagtgctcacagaactggtatccaagatgagagacatgcagatggacaagacagagctg
ggttgccttcgggctatcgtcctcttcaacccagactctaaaggcctgtctaacccaggt
gaggtggaggctttgagagagaaggtctacgcctctctggaggcctactgcaaacagaaa
tacccagatcagcctggcaggtttgccaagctgttgctacggttaccagccctgcgctcc
attggtctgaagtgtctggagcacctgttctttttcaagctcatcggggacacgcccatc
gacaccttcctcatggagatgctagaggcgccccaccaaatgacataa
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