Oncorhynchus kisutch (coho salmon): 109868667
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Entry
109868667 CDS
T09179
Symbol
setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109868667 (setx)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109868667 (setx)
5.6.2.5 RNA 5'-3' helicase
109868667 (setx)
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109868667 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
Viral_helicase1
UvrD-helicase
AAA_22
ResIII
UvrD_C_2
AAA_16
Rad17
AAA_7
Motif
Other DBs
NCBI-GeneID:
109868667
NCBI-ProteinID:
XP_020313969
Ensembl:
ENSOKIG00005026141
LinkDB
All DBs
Position
LG23:34431437..34488545
Genome browser
AA seq
2459 aa
AA seq
DB search
MMSMCRWCTSLGDDVAKLLQRYCAVSWLAEDEEAVNEKAALNDDLDKCLECVVAYHRAKE
ELPGLHRRLWELETSRLLDLFSHAAKDAQPAKDLSYVEEDGREIGVSNISPAVYEDRLGV
PLSEVLKYPYLLASPQLSEMCVEAICKMEEYNSFRVCSKDPGIYLLLVHPNEMVRRWAIG
AARSLGKVDRDDFYDLQDIFTCMFYIVELRIPQNFPDMDTSYDPTTKMTLLQPHLYDSKN
AKNYWLGICMLLTQLDAQAMDSLFLGPDKQANILLCILNALKDEEPSNEMDPFWPVLQCF
MVILDCLGSRFWGQIEPSQAFQAITQSPSYSGELESIRQQTMISRVKTETTYDDDMVTCS
QMVYDSNTKVSKGSRRSRGVDSNVVYEDMSSLVNLLHSDVGQALRVHDSTFLWFIPFVKS
VMDLDEHSVLYITEVVHYLCGEISTDLPKPQVRICDKVTEFFTLILVHIIELHLGSGRMN
MLYYCAPKWVGVLVKCATLPGDAFVHTSEGPVSHSVSSTSSLRVSVPRKASTSRAVPQAC
MHIIRSLLKEGTRLSPNSKCHHFLNLLNKHLRDGQQREWKLIRPEIQELQSCLKDYVKMM
MNRPTISTSPPEPLDIEAGPVAPTTPPLQSSNDPSGPSSLAEFNPPIKLEGLWDDVEGST
SGSGDFSGVQRGWDINIALVKKEPLTPEEGFVEPTNDSRPTQDNLTSLRADPEKIQVIKS
RLGQLMTKKSKSERARPSVGLSEFGKEKPENLHTSRREEASNLQGISRHPPCFQESMDNV
PLSVLKSNLKGKGGSKSSRDRSKGNSRQFDRPQSPPKSTSDVIVISDDEATLDVGSARRP
ECLSETSQIKNEPDASDQIPSPCRDYDGDMSESQVFEFETQEDMVSAWSNRDSESNMPPE
KPKDDSPISPTSREPLSSWECDTQPIYDEDIERACQQVEKELEKPKTPTQGLKRAIVVKK
RNLLVDAKPLASKCLSKKPTVVEKRIKEPVKDAPHAVTPPLRKSSSTVRSNRLETETRSS
LTTSAISHKMSLTPAIVPPKKVRKAPEPVSTAEKLGLKKKVRKAIDLSQGSRDSVGDLRH
HGATVNVPQAKKPTRQTKRSKVTFPQKRVVKGSNNKLFQFFRQSKQALGAGISEKAEPMK
RDPKKNDEIQTPSFATEEDDEDEDLQCSQQDPASHQEQLTFNCSSQRANEDKPASSNTVS
SVLSNMDRQISPYFQRNDVTPGPSGQVPKSNEGEEDDDDDDDADWMHLTQMEPTEMEMCT
QLEEEEDFFYTQRDPVDMDIDADSQRPFEDKGGSSDLTWLKQADEGQEAPLATQTFKKPA
TPPPSRSNLTQDDERLFLKPGMSPMSVKKAKPSTTKIYATSSSRSASLVQEMERTANAPF
SASSAPAGRGRPARPVVPARPVVPGLPVVHAQSPCVRQLPPHREVGQSLPLNRLLYKPIA
PQPPPKPIPPKQPPPRPEQNLPRPPCLPLRPVQHSNTCSTPQPSTSRHDAPFRSQIPNPE
VGFRFDTNFLVQHILKWTFDMFSNYKQFGIPSELCELPLKEVGSSFSSYDEYYKTFYPLL
LTNTFEELAGEWLKNKESGKVVTQNLKVVAHEYIHSVWNVSFTASITASDDSRQMFPREE
DLVILWLPQNRGAYTWHEQDLLDPQEQFGYVQRSNVCNGGVGQCPTLNLMIKTLGNVRLV
NKQAVRCDVVGSLVSTMREFRAICLLNSSSMRKPLLAPHVSYFQPGPEVIPSLNLPDYNL
DQVRAVRTGLSVIRNQQLTPKICLIHGPPGTGKSKTIVGMLQKLFSEGVQSMSPPVNRHS
EPRRMRVLLCAPSNAAIDNLMKKIIPVFKEKCRNIQGNCGDINLVRLGNERTISKNLKPF
SLDSQVKNKTQRAQMSQDSDIHRRRAQLDENIDKISKILPKLQKKEEMYHELAAQKSRML
QERETLSLQLKKSRIRKQETQAQVLQDAHVVCCTLSTSGSTVLESAFRRLGHKPFSCVIV
DEAGQATETETLIPLLYHCNALILVGDPHQLPPTVISQKAKELKYGQSLMARLVKNLDRY
CKENKKPSPVVFLSCQYRMHPEICEFPSKHIYGKALKTDSETAERRGNFGWHLLPYRVFD
VTDGQEVKEGASFSNLKEVQLVVFLLRLMAEKQQVKVGVITPYNAQKDRINREMAKVVNK
NLTVDVDTVEGFQGREMDCVIVSCVRASHEQGGIGFLGNRQRLNVTITRAKFSLFILGHL
RTLQENQDWGALIKDAATRDVIISTNEMTFKTDARKIFKKELTRSSSYPLREPGPPSAAP
CPTAHPPRPAPFQLRRSSEPALFAQGRDSPQQPWSASPPQDADRPRDPRLVVQTPQHRPD
WNPRAERIRLPQAEIRRDPRAERDPRGCNSPEQRHPTGYQNQRWAVRERDREQHRSPITA
PYPGDGVNRPPRDPSQRDYNRYSATAFNHHTHTHPRKRDPDPRWIPPTHSKRGRERTDH
NT seq
7380 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcatgtgccgttggtgcacgtcattgggtgacgatgttgcaaaactgctccag
aggtactgtgctgtgtcttggttagcagaggatgaggaggcagtcaacgagaaggcggca
ctcaacgatgacctcgataagtgcctggagtgtgtggtagcgtaccatcgggcgaaggag
gagttacctggactgcaccggaggctatgggagttggagacgtccaggctcctggacttg
ttttcacatgcagcaaaagacgcacagccggcaaaggacctcagctatgtagaagaggac
ggccgggaaatcggagtgtcaaacatcagccccgcagtgtacgaggaccgtcttggggtt
cccctgtcagaggtcctcaaatacccctacctgctggcatcccctcaattgagtgaaatg
tgtgttgaggcaatttgtaagatggaggaatataactccttccgggtgtgttctaaagat
ccagggatctacctcctcctcgtccaccccaacgagatggttaggcggtgggcaattggt
gctgcaaggtctttaggtaaggtggaccgagacgacttttatgaccttcaggacatcttc
acctgcatgttctacattgtcgagctgagaatcccccagaacttcccagacatggatacg
tcctatgatccgacgactaagatgacattgctgcaaccgcatctttacgattccaaaaat
gcaaaaaactactggttgggtatctgtatgcttctgacacagctggatgcccaagctatg
gactccctgttcctggggccagacaaacaggccaacatactgctctgtatccttaatgcc
ttgaaggatgaagaaccatccaacgagatggatcccttttggccagtcttgcaatgtttt
atggtgatcttggattgtttgggctccaggttttggggtcagattgagccatcccaagcc
ttccaggccatcacacaaagccctagctactctggagagctcgaaagcatcagacaacaa
accatgatatcacgggttaaaacagaaactacatatgatgatgacatggtgacctgcagt
cagatggtatatgacagtaacaccaaagtgagcaagggaagcagacgctcacgtggtgtg
gatagcaatgtggtctatgaggatatgagttcgctggtcaacctcctgcattcagacgtt
gggcaggcattgcgtgtgcacgacagcacatttctctggttcatcccctttgtaaaatct
gttatggaccttgacgaacacagcgtcctatacattactgaggttgtccactacctatgt
ggggagatcagcacagacctcccgaaaccccaggttcgcatatgtgacaaggtcacagag
ttcttcactcttattctggtccatatcatcgaattgcacctggggagtggccgcatgaat
atgctctattactgcgctcccaagtgggtgggcgtgttagtgaaatgtgccaccctgcct
ggtgacgctttcgtccatacctcggaaggtccagtttctcactctgtgtcttccacatcc
tccttgagggtcagtgtgccccgaaaggcctctactagcagggctgttccacaggcatgc
atgcatatcatccggtccctgctgaaggaagggaccaggttgagccccaacagcaagtgc
caccacttcctgaaccttctgaacaagcacctcagagacgggcaacagagggagtggaag
ctgattaggccagagattcaggagcttcagagctgtttgaaggactatgtcaagatgatg
atgaacaggccaaccataagtacttctccacctgaaccgctggacattgaggcagggcct
gtggcaccaaccacaccaccacttcagtcaagcaatgacccctcgggacctagcagctta
gctgaatttaaccctcctataaaacttgaagggttgtgggatgatgtcgaaggcagtaca
tctggtagtggggatttttctggagttcagagggggtgggacataaacatagcgttggtg
aaaaaggagcccctaacgcctgaagaggggtttgtagagccgactaatgattctagacca
acccaagacaacttaacttccttgagggcagatccagagaaaatacaggtgatcaaatcc
agactcggccagcttatgaccaagaagtccaagtctgagagagcgaggccctctgtaggg
ctcagtgaattcggtaaagagaaacctgaaaatctgcacaccagccgtagagaggaggca
tccaacctccaaggcattagcagacaccctccatgcttccaagaatccatggacaatgtg
cccctctctgttttaaaaagtaatcttaaaggtaaaggaggctccaaatcctcacgagat
cggagtaaaggaaactcgagacaatttgaccgaccacaatccccaccaaagtcaacttca
gatgtaattgttatatctgatgatgaggctacattagatgttggtagcgcaagaaggcct
gagtgtttgtctgagacctcccaaataaaaaatgaaccagatgcctctgaccagattcct
agtccctgtcgtgattacgatggagacatgagtgaatctcaggtgtttgaatttgaaaca
caggaagatatggtgtctgcctggtccaacagagattcggaaagtaacatgccacccgaa
aagcccaaagacgatagccctatcagtccaacttcaagagagcctttatcaagctgggaa
tgtgatacacaaccgatctatgacgaggatatcgaaagagcctgtcagcaggttgagaag
gagcttgagaagcctaagaccccaactcaagggctcaaacgggccattgttgtcaaaaaa
agaaatcttcttgttgatgcaaaaccattggcctccaaatgcctgagcaagaaacctacc
gtggtagaaaaacgaatcaaagagcctgtgaaggatgctccccatgcagtcacaccgcca
ttgagaaaaagcagttcaacggtacgttcaaacagactggaaactgagacacgctcttcc
ttaaccacatcagctatctcacacaaaatgtcattaactccagccattgtccctcctaaa
aaagtcagaaaagccccagagcctgtgtccacagctgagaagcttggccttaagaagaag
gtgcgaaaggccattgatctttcccagggatcacgtgattctgttggtgatctgaggcat
cacggcgctacagtcaatgtcccacaggccaagaagccgacccgacagaccaagaggtcg
aaggtgaccttccctcagaagagagtggtcaaagggagtaacaataagctgttccagttc
ttcaggcagagcaagcaggcattgggagccggaatctctgaaaaggcagagccaatgaag
agagatccgaaaaagaatgatgaaattcaaactcccagttttgctacagaggaggacgat
gaagacgaggacctgcagtgttcccagcaagatcctgccagtcatcaggaacagctgacg
ttcaattgcagctctcaaagagccaatgaggacaaaccagcatcctctaatacagtgagt
agtgtgttgtctaacatggacaggcagatctctccatactttcaaaggaatgatgtcaca
cctggaccttctgggcaagtccccaaaagcaatgaaggtgaagaggatgatgatgatgat
gatgatgcagactggatgcacctcacccaaatggagccaactgaaatggagatgtgcacg
cagttggaggaggaagaagatttcttctacacacagcgggaccctgtagacatggacatt
gacgcagacagccagaggccctttgaggataaaggagggtcttcagacttgacatggtta
aaacaggcagacgaagggcaagaggctccacttgccacacagacttttaagaaaccggct
actccgccaccctcacgctctaacttgactcaggatgatgagcgcttgttcctgaaacca
ggaatgtctcctatgtcagttaaaaaggccaagccgtccaccaccaagatctatgcaacc
tcaagctccaggagtgcctccttggtgcaagagatggagaggactgccaatgctccattt
tcggcttcttctgcacctgctggaagaggtaggcctgcccgtccagttgtgcctgcccgg
ccagttgtgccaggcctgccagtcgtgcatgcacaaagtccctgtgtacgacaacttcct
cctcatcgagaggttggtcagtctcttccactgaatcgactcttatacaaacccatcgca
ccacaaccaccacctaaacccattccaccaaaacaaccaccacccagacctgaacaaaac
ctcccccgtccaccttgccttcccctccgccctgtccagcacagcaacacatgttccacc
ccccagccctccacctccaggcatgacgcccctttccgaagtcagatacccaacccagag
gttggcttcagatttgacaccaacttcctagttcaacacatcctgaaatggacctttgat
atgttcagtaactacaagcagtttggtataccctctgagctatgcgagttaccactgaag
gaagtaggatccagcttcagctcttatgatgaatactacaagaccttttaccccctgctt
ctcaccaacacttttgaggagcttgcaggtgaatggctaaagaacaaggaatcaggaaag
gtggtaactcagaatttaaaagttgtcgcacatgagtacatccacagtgtttggaatgtc
agctttacagcgagcattactgccagtgatgactcccgtcagatgttcccacgggaggag
gacctggtcattctgtggctgccccagaatagaggtgcttacacttggcatgagcaggac
ctcttggatccccaagaacaatttggatatgtgcagagatccaatgtctgcaacggaggc
gtgggccagtgcccaactctgaacctgatgataaagaccctggggaatgtgaggttggtg
aacaagcaggcagtgcgctgtgatgtggtgggctccctggtcagcaccatgagggagttc
agggcaatctgtctgctcaatagcagctctatgcgcaagcctctcctggccccacatgtc
tcctacttccaacctggcccggaggtcatccccagcctcaacctgcctgattacaaccta
gaccaggtgagggcggtgagaaccggtttgtccgtcatcaggaaccagcaactcacccca
aaaatatgcctgatacacggacccccaggaacgggaaagagcaaaaccatcgtgggtatg
ctgcaaaagctgttctctgagggagtacagagcatgtctcctccagtaaacaggcattct
gaaccccgccgcatgagggtcctcctgtgtgccccgtccaacgccgccatcgacaacctg
atgaagaagattatcccggtcttcaaggagaagtgcaggaacatccagggtaactgtggg
gacatcaatctggtgaggcttgggaacgaaaggacaatctccaagaatttaaaacctttt
agcctggacagtcaggtgaaaaacaaaacacaaagggcccagatgtcacaggactcagac
atccaccggcgcagagcgcagctggacgagaacatagacaagatctccaagatattgcca
aaactgcaaaagaaagaggaaatgtaccatgagctggcagcacagaagtccagaatgctc
caagagagagagacactcagcctccaactcaaaaaatctcgcattaggaagcaggaaacc
caggcccaggtactgcaagatgcccatgtggtctgctgcaccttgagcaccagcggcagc
accgtcctggagtcggcgttccggcgcctgggacacaagccctttagctgcgtcatcgtg
gacgaggcagggcaggccaccgagacggagactctcatccctttgctctaccattgcaac
gccctcatcctggtgggagacccccatcaactgccccctacggttatctcccagaaagcg
aaggagttgaagtacggccagtccctgatggctcggctggtgaagaacctggatcgctac
tgtaaggagaacaagaagcccagccctgtggtcttccttagctgccagtaccgcatgcac
cccgaaatctgcgagttcccctccaagcacatctacggcaaggcccttaaaactgacagt
gagactgcagagaggagggggaactttggctggcatctcctgccctaccgtgtgtttgac
gtgaccgacggtcaggaggtcaaggagggagcgtcgttcagcaacctgaaagaggtgcag
ctggtagtgttcctgctgaggctgatggctgagaagcagcaggtcaaggtgggggtcatc
acgccgtacaatgcccagaaggaccgcatcaaccgcgagatggccaaggtggtcaacaag
aacctcacggtggacgttgacactgtggaaggcttccagggccgagagatggactgtgtc
attgtctcctgcgtcagggcaagccacgagcagggcggcattggattcctggggaatcgc
cagaggttgaatgtgaccatcacccgggccaagtttagcctgttcattctgggccatcta
cggacactccaggaaaaccaagactggggtgcgctcatcaaggatgctgcgacacgagac
gtcattatatcaacgaatgagatgaccttcaagacggacgccaggaagatcttcaaaaag
gagctgaccaggagctcgtcttaccccctcagagaaccaggccctccctctgctgccccc
tgtcccaccgcccatccccccaggcctgctcccttccagctacgccgctcttctgagcca
gccctgttcgcccagggcagggactccccccagcagccctggtcggcatcccctccccag
gacgctgacaggcccagagacccccgtctggtagtccagacaccccagcatagaccagac
tggaatccgcgagctgaaagaatcaggctcccacaagccgagatcagaagagacccacga
gctgagagggatccacgaggatgcaacagcccagaacagcgtcacccaactgggtaccaa
aaccagagatgggctgtcagggagagggacagagagcaacaccgttcaccaatcaccgcg
ccatacccaggagatggagtcaacagaccaccgagggaccccagtcagagagactataat
cgctacagtgctacagccttcaaccaccacacacacactcacccccggaaacgagaccca
gacccccgatggatccctcccacccactccaagagggggagagagaggactgaccactga
DBGET
integrated database retrieval system
