Oncorhynchus kisutch (coho salmon): 109869113
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Entry
109869113 CDS
T09179
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109869113 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109869113 (pan2)
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109869113 (pan2)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109869113 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
109869113 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
Motif
Other DBs
NCBI-GeneID:
109869113
NCBI-ProteinID:
XP_020314567
Ensembl:
ENSOKIG00005034956
LinkDB
All DBs
Position
LG24:14270031..14290815
Genome browser
AA seq
1195 aa
AA seq
DB search
MMNFDGLDPGMGEYAPALHGNLEPSREPSMDPRLNPGLLQGVELDPDGLPVAIPESVHMM
EGMFSELHSVHAEVGVPVTATHFDLQEELLWMGNHRGHAMSFFGSTMGRYSSFQAHSTDD
IRQIQSMETGVLFLSKSNLKCQTRGGLVMFDYPMEEGADMHSLLMTENNAMLMGGLQNYV
LEFDLNTVQQTQKFTVEAPGVAIMRQSNRFLFCGNTSGKVSLCDLRTFKLEHEFDAFSGS
LSDFDVHGNLLAACGFSSRGLNRLACDRFLMVFDLRMMRTVTPLQVHVDPLFLRFIPTYT
SRLAIISQTGECQFCEPTGLANLADVFHVNTVGQLLMSFDVSSSKQALAFGDSGGGVHLW
SDAPEVSYNSYSRETEFALPCLVDSLPQLDWSHDLLPLSLIPMPLNSSEPLLSDWVTTQA
TPSPRRAPPVDPEILRTMNSVGFIGYAPNPRTRPRNQVPYKIKEVELDYDNYNQGVPESL
IGRDEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVL
YFLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGL
ILADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGASSSALGSSGESVIGR
QFGCEVENSSLCRCGKETVRSSLTLLFTMHYPEQNSLDKTIKEYDFAEILKKSICLEQST
QAWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSVKEAEFWKAQAEYAFIKAKKKEEMEP
HKPKEPPPPQPTEWCLEEGLVNTEGLTFDTRVEDLRHIWIPLTLKMSISKSQGLEISSWP
EEEELSSTEEAEGASLYDLVVTVPHVLDARTGGNLVAHIKVGETYHVRKEGVTHQQWYLF
NDFLIEPIDKAEAAQFDVNWKVPAILYYAKRNYHSKYDLRIKNPIEASVLLTEASLARKQ
RKSHATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCV
RGQGPNDGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLI
DTGVRFVGHGLQKDFRVINLLVLKDQVVDTVYLFHMPRKRMISLRFLAWYFLDLNIQGET
HDSIEDARTALSLYNKYLELSRGGGNNEVRKVLKGLYEKGRKMDWKVPDCDTGDG
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgatggtctggacccaggaatgggtgaatacgcacccgccctccatggg
aatctagagccgagtagggagccctcaatggatccacgactcaatccgggtttgttgcaa
ggtgtggagcttgatccagatggtcttcccgtggccatacctgagtctgtgcacatgatg
gaggggatgttctctgagctccacagtgtgcatgcagaggtgggcgttcctgtcacagca
actcactttgacctgcaagaggagctactctggatgggaaaccacaggggacatgcaatg
tccttctttggttcaaccatgggccgctactcatctttccaggcgcactcgactgatgac
attcgtcagattcagagcatggagacaggggttctgtttctctctaagagtaatctcaag
tgccaaactcgtggaggcctcgtaatgttcgactacccaatggaggagggagctgacatg
catagtctgcttatgacagaaaacaatgcaatgctcatgggtggactacagaattatgtg
cttgaatttgaccttaatactgtgcagcagacccaaaagttcacagtcgaggctccaggg
gtagctatcatgcggcagtccaatcgtttcttattctgtgggaacacatctgggaaggtg
tccctttgtgacctgcgcaccttcaagctagaacatgagtttgatgccttctccggtagc
ctgtcagacttcgatgtccatggcaacctcctggctgcgtgtgggttctccagtcgaggg
ctgaacagactggcgtgtgaccgcttcctcatggtgtttgacctgcgcatgatgcgcact
gtgacaccactccaggtgcacgtggaccccctcttcttgcgcttcatccctacatacacg
tcacgcctggccatcatctcacagacaggagagtgtcagttctgtgagcccactggacta
gctaacctggctgacgtcttccatgtcaacaccgtgggccagttgctcatgagctttgat
gtgtcctccagcaagcaggctttggcctttggggactctgggggaggtgtgcacctttgg
tcagacgccccagaagtctcctacaacagctactcacgggagacagagtttgcgctgccc
tgtctggtagactccttgcctcagctagactggagccatgacctgttgcccttgtccctc
atccccatgcctttgaacagctcagagccgctgctgtcagactgggtcaccacacaggcc
actcccagccctaggcgagcacccccagtggacccagagatcctgcgcactatgaactct
gtagggttcattggttacgcccccaatcctcgcacacgtccccggaaccaggttccttac
aagatcaaggaggttgagctggactatgataactacaatcagggtgttcctgagtctctt
attggtcgagatgaagaaccacacctgtacatggtgcccaagaaatacaggaaggtcacc
atcaaatactccaaacttggcctggaggactttgacttcaaacattacaacaggaccctg
tttgctggtcttgaacctcacattcccaatgcttactgcaactgcatgatccaggtgttg
tatttcctggagccaatccgctgcctggtccagaaccacctgtgtcagaaggagttctgt
ctggcgtgtgagctgggcttcctcttccacatgctggacctgtcacgaggagacccctgt
caggccagtaatttcctccgagctttccgaacaatcccagaggcgtctgccctgggcctt
atcctggctgactctgatgagcagacggggaaggccaggctgggtcgtctcatccagagt
tggaaccgcttcattctaacccagctccaccaggagacccaggagcaggaggggccacag
gcctaccgaggagccagcagcagtgctctgggctcctcaggcgagtctgtaatcggaagg
cagtttgggtgtgaggttgagaacagcagcctgtgtcgctgtggaaaggagacagtacgc
tcctctctcaccttgctcttcaccatgcactaccctgagcagaactcacttgataagacg
ataaaggagtacgactttgctgagatcctgaagaagagtatatgtctggagcagagtaca
caggcatggtgtgagaactgtgaaaagtaccagcccacagtgcagacacggaacatccgc
tgccttcctgatgtgctggtcattaactgtgaggtgaacagtgtcaaagaagctgagttc
tggaaggctcaggcagagtacgctttcatcaaggccaagaagaaagaggaaatggaaccc
cataagcccaaagaacctccaccaccacaaccaacagagtggtgcttagaggaggggctg
gtcaatacggagggcctgacctttgacaccagagtggaggacctgcgtcacatctggatc
cctctcactctgaagatgtccatcagcaaaagccagggcctggagataagcagttggcca
gaggaagaagagctgagctctactgaggaggctgaaggagcgtctctctatgacttggtg
gttactgtgcctcatgtactggacgctcgaactgggggaaatctggtagcacacatcaaa
gtgggagagacttatcacgtcagaaaagagggggtaacacaccagcagtggtatctattc
aatgatttcctgattgagccaattgacaaggcggaagcagcacagtttgatgtgaactgg
aaggtgcctgccatcttgtattacgccaagagaaactaccactccaaatacgacctacgc
attaaaaaccccatcgaggccagtgtgctgctgacagaggcatcactggcgaggaagcag
aggaagagccacgccacgttcatccccctcatggtcagtgagatgccccaggccggagac
ctcgtggggctggacgctgagtttgtcaccctcaaccaggaggaggcagagctacgcagt
gacggcaccaagtctaccattaagcccagtcagatgtctgtggcacggatcacctgtgtg
cgcggtcagggtcccaacgatggagtaccattcatcgatgactacatctccactcaggag
caggtggtggactatctgacccagtactcaggcatcaaaccaggggacctagatgctaag
atttcctccaagcacttgaccactctgaagtcaacttacctgaagctgcgcttcctcatt
gacaccggagtgcgctttgttggccatggtttacaaaaggacttccgggttataaatttg
ctggtgctgaaggatcaggttgttgacacagtctacctgttccatatgcctcgtaagagg
atgatctctctgcgctttctcgcctggtacttcctggaccttaacatccagggtgagacc
catgacagtatcgaggatgcacgcaccgcgctttctctctacaataagtacctggaactg
agtcgtggaggaggaaacaacgaagtccgcaaagttctgaagggactctacgagaaaggc
cgcaagatggactggaaagtcccggactgtgacacaggagatggttaa
DBGET
integrated database retrieval system
