Oncorhynchus kisutch (coho salmon): 109869371
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Entry
109869371 CDS
T09179
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109869371 (ddx20)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109869371 (ddx20)
Spliceosome [BR:
oki03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
109869371 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
HypF_C_2
AAA_19
DUF2399
Motif
Other DBs
NCBI-GeneID:
109869371
NCBI-ProteinID:
XP_020315047
Ensembl:
ENSOKIG00005015610
UniProt:
A0A8C7M8W5
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All DBs
Position
LG24:complement(34309040..34315885)
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AA seq
834 aa
AA seq
DB search
MASSMKKAAHDIETRKRTDDVVLSGGIDFNALLLSQPVLDGLAASGFKKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFSAIALDSLVMENTTTQVLVLAPTREIAVQIHSVVMAIGS
AMEGLQCHVFIGGTPVSQDKISLKKCHIAVGSPGRIKQLIELGLLVTASIRLFVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAQHLAHYMREPTFVRLNPSDPGLIG
LKQYYKLVRSHAMPHKVFEEKVLLLLELFSKVPFNQALVFSNLHTRAQHLADILSSKGLP
AVCISGSLSQDQRMEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTHGLAVTYCCHGEEENKMMAIAQKCNLILCALPDPIEPGLMQEPCDWDITV
EALTPGTNSQVFPKTERRRRAKTESPAPKPIRDQNPSPVHPESTEPSRPCKSQHTASPVA
KAGPKHKNASPALDVLLPPPKASVVPGASLALSRKEQQDALPKIPPLSAFKSQRSGIMTF
QEAELDFQSFIREGLGRTVEVIRQFRGHGDDGEGFNGQHGYEESHTLQDDDVPLTHTHMT
PNGERPPTPTQLPLKTNSDPSPLESTSDGSSSDCDMEEDRQADESTQSSTDQTRGSEHKP
IIPIQTQSAQQSTVLDGARKPKFTPPRSQPNSPSVPHPSHHRSPRPEGRAVSTNPGEGEP
LLWKAKDREATAQQWSRETAKKVKGEKRDILEERKVPENRGSERKRDRVSEVEEEDDGEG
YEGYWRAYYRAWEDYYASMPPSHHQGYHGYHSMASSWMAAYRMNSVYMEELLKH
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctcaatgaagaaggctgcccacgatattgaaacgcgaaaacggactgatgat
gttgtcttgtcgggcggtatcgacttcaacgccctgttgttgtctcagcccgtgctcgat
ggactggcggcttctggattcaagaaaccgtctccaatccagctcaaagccattccgttg
gggcgatgcggactcgatctgatagtgcaggccaagtctggcacagggaagacctgtgtg
ttctctgccatcgccctggactctctggtaatggagaacactacaacacaggtgctggtg
ctagccccgacccgtgagatagcagtgcagatccactctgtggtgatggctataggcagt
gccatggagggcctgcagtgtcatgtcttcattggggggacgcccgtcagccaggacaag
atcagtctcaagaagtgccacatcgctgtgggatcaccaggacgtatcaagcagctgatt
gagctgggtcttttggttaccgccagcatccgtctgtttgtgctggacgaggctgacaaa
ctactggaggaaggcagcttccaggaccagatcaattggatattctcctctctaccggtc
aacaaacagatgttagccctgtctgccacctacccagaatcccttgcccagcacctggcc
cactacatgagagagcccaccttcgtcagacttaacccctccgaccccggactcataggt
ttgaagcagtactacaagctggtgcgctcccatgccatgccccataaggtgtttgaggag
aaggttctgctcctgctggagctgttcagtaaagttcccttcaatcaagctctggtgttc
tccaacctgcacaccagggctcagcatttagcagacatcttgtcctcgaagggccttcct
gctgtctgtatctcaggtagtctgagtcaggaccagcgaatggaggccatgtctaaactg
aagcagtaccagtgtagagtactcatctctactgacctgacctccagaggtatagatgct
gagaaggtgaatctggtgatcaacctggatgttcctcaggactgggagacctacatgcac
cgtataggacgagccggacgctttggtacacacgggctggcagtgacctactgttgccat
ggcgaggaggagaacaagatgatggccatcgctcagaagtgcaacctaattctttgcgct
ctaccagaccccatagagccagggctgatgcaggagccttgtgactgggatatcactgtg
gaggccctgacaccagggactaattcccaggtgttccccaagacagagcgaaggagacgg
gctaagaccgaatccccagcccctaaacccatcagggatcagaaccccagccctgtccac
ccagagagcactgaacccagccgaccatgtaagagccagcacacagccagtcctgtggct
aaggctggtccgaagcacaaaaatgcatcccctgccctggatgtcctcctaccccctccc
aaggcttcagtagtccctggggcctcactagctctctcccgtaaagagcaacaggatgcc
ctgccaaagatccctccgctcagcgccttcaagagtcaaaggtcagggatcatgaccttc
caggaggcagagctggacttccagagcttcatcagggaggggctgggaaggacggtggag
gtcatccgacagttcagaggtcacggagacgacggcgagggatttaacggtcagcacggc
tacgaggagtctcatacactccaggatgatgatgtgccactcacacacacacacatgaca
ccgaacggagagcgtccaccaacacccacacagcttcctctaaagacgaactctgacccg
tcacctttggagtcaacttctgatgggtccagctctgactgtgacatggaggaagaccgg
caggctgacgagtcaacgcagagctccacagatcagaccagaggatctgaacacaaacca
atcattccgattcaaactcaatctgcacagcaatccacagtcctggatggggcaaggaaa
ccaaagtttacgccacctagaagccaacccaactcaccgtctgtaccccatcctagccac
cacagatcccccagaccagaggggagagctgtgagtacaaaccccggggagggggaacct
ttgttgtggaaggcaaaggacagagaggctacagcacagcagtggagtagggagacggct
aagaaagtcaaaggggagaagagagatattttagaggagaggaaggtgcctgagaatcga
gggagtgagaggaagagggacagagtgagtgaggtagaggaggaggatgatggtgagggt
tatgagggctactggagggcctactacagagcttgggaggattactacgcctccatgccc
ccctctcaccaccagggttaccatggctaccacagtatggcgtccagctggatggctgcc
taccgtatgaactctgtgtacatggaggaactgttaaaacactaa
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