Oncorhynchus kisutch (coho salmon): 109869378 Help Entry 109869378         CDS       T09179                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism oki  Oncorhynchus kisutch (coho salmon) Pathway oki04510   Focal adhesion oki04512   ECM-receptor interaction oki04518   Integrin signaling Brite KEGG Orthology (KO) [BR:oki00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     109869378    04518 Integrin signaling     109869378  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     109869378  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:oki00536]     109869378 Glycosaminoglycan binding proteins [BR:oki00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    109869378 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  109869378 NCBI-ProteinID:  XP_031660114 LinkDB All DBs Position LG24:complement(24418162..24445550) Genome browser AA seq 1420 aa AA seqDB search MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDHVAIGAKGQKGEPGEIADVVGANGPAGPM GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPAGLGGNFAAQMAG GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA GAKGEGGAPGENGASGPMGPRGLSGERGRPGPSGSAGARGNDGLPGPAGPPGPVGPAGAP GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPHGAPGPA GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTP GSDGPKGAIGPSGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR GLTGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV GSPGPNGNPGAAGPAGPAGKDGPKGVRGDSGTPGRQGDAGLRGAAGAPGEKGDAGGDGLP GPDGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGPAGPPGNP GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ IENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY PSIANVPQKNWWTSKSNDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ SLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVMEDGCKKHTGQWGK TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGTVCFL NT seq 4263 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcacggactgttctgctacttgtagcatctcaagttgtttta ctatccattgtcagatgtcaggaagaggatgaccacgtggctattggtgctaagggccag aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg ggcccctcaggtgagcagggacctcgtggatcagccggagctaagggtgataagggaaat gttggccccagaggcagagatggcgagcctggcacccccgggaaccccggaccccctggc ccacccggacctaacggacctgcaggccttggcgggaactttgctgctcagatggctggt ggattcgacgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct atgggtccccgtggtccccctggcccttctggagcccctggcccacaaggtttccaaggt aaccccggagagactggagagccaggaccagctggcccactgggaccacacggaccaccc ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga atcaaaggacacaggggtcaccctggtctggatggagctaagggagaaggcggtgctgct ggagccaagggtgagggtggtgctcccggagagaacggcgcgtctggaccaatgggacca cgtggtctgtctggcgagagaggccgtcccggaccttctggctctgctggtgcccgaggt aatgatggcttgcctggccctgctggtcctcccgggcctgttgggcctgctggagcaccc ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact gagggcgcacagggaccccgtggagaggctggtacacccggatctcctggacccgctggt gcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggcgcttct ggaattgctggtgcacctggtttccccggaccgcgtggcccccccggacctcagggagca acaggacctcttggacccaagggacagtctggagaccccggtattcctggcttcaaagga gaggctggtcccaagggagagcttggccctataggtccccatggcgcccctggccccgct ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgcaggt tctaagggagcccctggtgaccgtggtgttcccggcgtgggtgggcctaagggaggcact ggtgaccccggccgcacaggagagcctggtcttcctggagccagaggtctcactggtcgc cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggatggt cgccccggcccacctggtcctcagggagcccgtggccagcctggtgtgatgggattcccc ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgt caaggtctgatcggtctggctggtaaagatggtgagactggtgctgctggacctctcggc cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt cctggagaggctggtgctgctggtgctactggacctagaggcgagcgtggtttccctggt gagagaggcggtgctggacctcagggtctgcagggacctcgtggacttcctggaactccc ggaagtgatggaccgaagggagccattgggccatctggtggtgctggagctcagggaccc ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggt gacagaggtgacaatggagagaaaggacctgagggcgcttctggaaaagacggttctaga ggtttgactggtcccattggtcctcctggcccagctggtcccaatggcataaagggtgag ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt gagggtggtccccccgggcctgctggcttcgctgggccacctggtgcagatggtcagcct ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt ggttctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa gacggtcctaagggagttcgtggtgactctggaaccccaggaagacagggagacgctggg ctgcgtggagctgctggagcccctggcgagaagggagatgctggaggggatggtctccct ggtcccgatggtccttcaggtccccagggtctggctgggtcacgtggtattgttggtcta cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt aagcagggagctcctggtgctggtggtgaccgtggaccccctgggcctgtggggcctcct ggactgtctggaccttctggcgagcccggacgagagggcaacgctggatctgatgggccc cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt gcacctggcgcccccggcgctcccggtgcccccggccctgtcggccccctgggcaagcag ggagacagaggagagggaggtgctcaagggcctgccggacccgctgggccagctggcgct agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcccggacctcca ggctccgctggagaccagggagctgctggacctgccggacctagtggtgctaagggaccc cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga ccccctggacctcgtggtcgttctggagaaactggccctgctggtccacctggtaacccc ggaccccctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc ctgtctcagcctgagaagtctccggatcccctgaggtacatgagagctgacgaggcgtcc agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag atcgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac ctcaaactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac cccagcatagccaacgtgcctcaaaagaactggtggacaagcaagagcaacgaccgcaaa catgtctggttcggagagaccatgaatggaggattccacttcagctacgctgaggacggt accaacgccgccagtatccagctgaccttcctgaggctgctgtccacggaagcgtctcag agcctcacctaccactgcaagaacagcgtggcctatatggacgcatccacgggcaacctg aagaaggctctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc cgcttcacctacagcgttatggaggatggctgcaagaaacacacaggccagtggggaaag actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc atggacattggaggagcggaccaggagttcggtgtggatgtgggaacagtctgcttcttg taa

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