KEGG   Oncorhynchus kisutch (coho salmon): 109869803
Entry
109869803         CDS       T09179                                 
Name
(RefSeq) mRNA export factor isoform X2
  KO
K14298  mRNA export factor
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109869803
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109869803
   03036 Chromosome and associated proteins [BR:oki03036]
    109869803
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     109869803
Chromosome and associated proteins [BR:oki03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    109869803
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_EML_2 WDR55 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 EIF3I WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C WD40_RFWD3 Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT140_1st eIF2A Beta-prop_EIPR1 Beta-prop_RSE1_2nd NBCH_WD40 WD40_MABP1-WDR62_2nd Beta-prop_ACSF4 Beta-prop_Nup120_160 ExoI_SH3 Beta-prop_WDR41 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 109869803
NCBI-ProteinID: XP_020315652
Ensembl: ENSOKIG00005050545
LinkDB
Position
LG24:complement(24034718..24046175)
AA seq 365 aa
MSLFGASTGFGAGGFGAATTDTHNPMKDVEVTSPPDDSISCLAFSPPAMPGNFLIGGSWA
NDVRCWEVQDNGQTVPKAQQMHTGPVLDVCWSEDGSKVFTASCDKTAKMWDLNSNQAIQI
AQHDAPIRTVHWIKAPNYNCIMTGSWDKTLKFWDTRSPNPMMSLQLPERCYCADVVYPMA
VVASADRGLIVYQLENQPSEFRRIDSPLKHQHRCIAIFKDKQNKPAGFALGSIEGRVAIH
YINPPNPAKDNFTFKCHRSNGTNTATPQDIYAVNAISFHPVHGTLATVGSDGRFSFWDKD
ARTKLKTSEQLDQPITACSFNNNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNATEELK
PRNKK
NT seq 1098 nt   +upstreamnt  +downstreamnt
atgagtttgttcggggccagcactggctttggcgctgggggatttggagcggcaaccacg
gacacccacaacccaatgaaggatgtggaagtaacctcacccccagatgacagcatcagt
tgcttggcgttcagtcctcctgccatgccagggaacttcttgatagggggatcctgggcc
aatgatgtgaggtgttgggaggtacaggacaacgggcagacagtccccaaagcccagcag
atgcacacgggtcccgtccttgatgtctgctggagcgaagacggtagcaaggttttcact
gcgtcttgtgacaagactgccaaaatgtgggacctcaacagcaaccaggcaatacagatc
gcacagcatgatgctcctatcagaacagtccactggatcaaagcccccaactacaactgc
atcatgactggcagctgggacaaaactctgaagttctgggacacccgctcgcccaaccca
atgatgtctctgcagttgccagagaggtgctactgtgcagacgtggtgtaccccatggca
gtggtagcgtctgcagaccgaggtttgattgtatatcagcttgaaaaccagccgtctgag
tttaggaggatagactcaccactcaaacaccagcaccgctgcatagccatttttaaggac
aaacagaacaagcctgctggatttgctctcggaagcattgaagggcgggttgcaattcac
tacatcaaccctcctaatccagccaaggataacttcacctttaagtgccacaggtcgaat
ggaaccaacacagccacaccacaagatatctatgctgtaaatgccatctccttccaccct
gtccacgggacactggcgactgttgggtcagatggtcgcttcagcttctgggataaagat
gcccgcaccaagctgaagacctctgagcagctggatcagccaatcacagcatgctccttc
aacaacaatggcaacatctttgcttacgcctccagctatgattggtcaaagggacatgag
tactacaaccctcagaaaaagaactacatcttcctgcgtaatgctactgaggagctgaaa
ccacggaacaagaaatga

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