Oncorhynchus kisutch (coho salmon): 109869850
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Entry
109869850 CDS
T09179
Name
(RefSeq) embryonic polyadenylate-binding protein isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109869850
09123 Folding, sorting and degradation
03018 RNA degradation
109869850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109869850
03041 Spliceosome [BR:
oki03041
]
109869850
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109869850
mRNA cycle factors
Stress granule specific factors
109869850
Spliceosome [BR:
oki03041
]
Complex C
Other components
Complex C specific factors
109869850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
Motif
Other DBs
NCBI-GeneID:
109869850
NCBI-ProteinID:
XP_020315715
Ensembl:
ENSOKIG00005012571
LinkDB
All DBs
Position
LG24:complement(28927648..28933657)
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AA seq
651 aa
AA seq
DB search
MNSSGQSYPLASLYVGDLHPDVTEAMLYQKFSPAGPITSIRVCRDVITRRSLGYAYINFQ
QPADAECALDTMNYEVLKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIDTMNGMLLNDRKVLETGSDSGIADP
KAHFLGGKCQLSTISFVGHFKSHKERQAEFGAKAMKFTNVYIKNFGDDYSDEKLQEVFSA
FGRTLSVRVMMDERGRSRGFGFVNYENHEDAQRAVEEMNGKELVPGRVLYVGRAQKRMER
QGELKRKFELIKQERIHRYQGVNLYVKNLDDGLDDEKLRKEFAPYGTITSAKVMTDGGHS
KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERKAILTNKYMQRTMPGPVI
DSYQQAGYYMSAVPQPPSRTFYNPNPASTMRTSPRWAAQPPRPQAPYSGQFVRSAVPRRA
STPISTVRQASTQAPRIINYTQRMANIGTQTAGGRAGMSGGMVRGTQYKYSSGVRNLQQV
ITMPAPMAVQQVVTQQIMEPAVHVRGQEPLTASMLAAAPLMEQKQLLGERLYPLIHGFHP
NLAGKITGMLLEIDNSELLHMLESPESLHSKVDEAVAVLQAHQAKETSPKK
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggtcagtcctacccattggcctccctctacgtaggggacctgcatcct
gacgtcacagaggccatgctctaccagaagttctctcctgctgggcccatcacatccatc
cgtgtctgccgtgatgtcatcactcgcaggtccctaggatacgcatacatcaacttccag
caacccgctgatgcggaatgtgctctggatacaatgaactatgaggtcctcaagggtagg
cctatcagaataatgtggtctcagcgtgacccagggctacggaagtcaggagttggaaac
atttttatcaagaacatggacgagtccattgacaacaaggccctgtatgacacattctca
gcctttgggaatattctgtcttgcaaggtagtgtgtgatgagaatggctccaaaggctac
ggctttgttcactttgaaacccaagaggcagccaatcgtgccattgataccatgaatgga
atgctattgaatgaccggaaagtgctagagacaggtagtgactctggcattgcagaccca
aaggcccacttcctgggggggaaatgtcagttgtccacgattagttttgttggccacttt
aagtcccataaggagcgacaggctgagtttggggccaaagccatgaagttcaccaatgtg
tacatcaagaactttggcgacgactatagtgatgagaaactccaggaggtcttctctgca
tttggcaggaccctcagtgtgcgggtgatgatggacgaaaggggccggtctcgtggattt
ggctttgtaaactatgaaaaccatgaggatgcacaaagggcagttgaggagatgaatggg
aaagaactcgttcctggccgagttctgtatgtgggccgtgctcagaagaggatggagcga
cagggggagctgaaacgcaagtttgagctgatcaaacaggaacgtatccaccgctatcag
ggggtcaatttgtacgtcaagaacttggatgatgggttggatgacgagaaactaaggaag
gagtttgccccttatggcaccatcaccagtgccaaggtgatgacggacgggggccacagc
aagggctttggcttcgtctgtttctcatctcccgaggaggccaccaaagcggtaactgag
atgaacggccgcattgtggccacaaagccgctgtacgtggctctggcccagcgcaaggag
gagcggaaggccatcctcaccaacaaatacatgcagaggaccatgcctggcccagtcatc
gactcctaccagcaggcaggctactacatgtctgctgtgcctcagcccccaagtcgcacc
ttctacaaccccaaccctgcgagcaccatgaggacatctcctcgctgggctgcacagcca
cccagaccacaggcaccctactcgggccagtttgtcaggtctgctgttccccgacgcgcc
tccacccccatcagcaccgtcagacaggcctccacccaggctccacgcatcatcaactac
acacagaggatggctaacattggcacacagacagcaggaggtcgggcaggcatgtctggt
ggtatggtccgaggcacccagtataaatactcatcaggggtgaggaacttacagcaggtc
atcactatgcccgcaccaatggcagtgcagcaggttgttacccagcagattatggagcca
gcggtgcatgtcagaggccaggaacccctcactgcctccatgctggctgcagcccctctc
atggagcagaaacagctgcttggtgagcgattgtaccctctgatccatggctttcacccc
aacctggctggtaaaatcactgggatgctgctggagattgacaactctgagctgctgcac
atgctggagtcacccgagtccctgcattctaaggtggatgaggcggtagctgtgctgcaa
gcccaccaggccaaggaaacctctcctaagaagtag
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