Oncorhynchus kisutch (coho salmon): 109870047
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Entry
109870047 CDS
T09179
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04514
Cell adhesion molecule (CAM) interaction
oki04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
109870047
04517 IgSF CAM signaling
109870047
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oki04515
]
109870047
Cell adhesion molecules [BR:
oki04515
]
Immunoglobulin superfamily
NGL family
109870047
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
ig
LRR_14
V-set
Ig_2
VEGFR1-3_N_Ig-like
LRRNT
DUF7617
Pam3_Gp34
Motif
Other DBs
NCBI-GeneID:
109870047
NCBI-ProteinID:
XP_020315953
Ensembl:
ENSOKIG00005039656
LinkDB
All DBs
Position
LG25:3741263..3761372
Genome browser
AA seq
751 aa
AA seq
DB search
MHVVMMTSPSTPSPLLWLVQLLLWLHHHGPQLTEAVPPCPNPCSCSNQASRVICTRKSLE
DVPDSISVNTRYLNLQENTIQVIKSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLDYI
SEAAFEGLVNLRFLNLGMCGLKDIPNLTPLVRLEELELSGNQLGIVRPGSFQGLVSLRKL
WLMHSKVTVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNCD
VLWLSWWLKETVPSNTTCCARCHAPPVLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSSSDSSNPYSFFTTVTVETVETNNGEDAGRQYINETYVPPDYLGP
TFSGGVLGKGRAGFTISPSRSSLHSFSPRATRNTENTVTVSIMDVTNITGLDDVMKTTKI
IIGCFVAITFMAAVMLVVFYKLRKQHQLHKHHGPTRAIEIINVEDEIGAGAGSGISGGST
MQSGCGGDGTLRMHHPEIVNLPNIGRSEHLNHYYKANHFNNNVMGLSIGTGAGVGTLSNK
NNLSPLNQQGQDIPISCTQVPIPSATFQTMSGNGTNTNPLSVSPPLPMSLPMPPMGLHGS
IKGFMGQNQNPQMEPLLFKGNSKENVQETQI
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttgtcatgatgaccagcccctccaccccctcccccctcctctggttggtccag
cttttgctgtggcttcaccaccatggacctcagctgacagaggccgtacccccatgtccc
aacccctgtagctgctccaatcaggcaagccgcgtcatctgtacaaggaagagtttagag
gacgtaccggacagtatatctgtgaacacaagatacctcaacttacaagagaacacgatt
caggtgataaagtcagacaccttcaagcacctgcggcatttggaaatactgcagctctcc
aagaatcacatccgacagattgaggtgggcgcgttcaatggcctgccaaacctcaacacc
cttgagctctttgacaatcgcctcacgctggtaccatcgcaggcctttgagtacctcagc
aagctgcgggagctctggctacggaacaaccccatcgagacactgccagcgtacgccttt
caccgcgttccctccctgcgccggctcgacctgggcgaactcagaaagctggactacatc
tctgaggccgcctttgagggcctggtcaacttgcgcttcctgaacctgggcatgtgcggc
ctgaaggacatccccaacctcacacccttggtcagactggaggagctggagctgtcagga
aaccagctggggattgtcaggccgggctccttccagggcctggtgtcactgcgcaagctg
tggctcatgcactccaaggtgacggtcattgagcgcaatgccttcgacgacctgaagaac
ctggaggagctcaacctgtcccacaactctctgcattcactgccccacgacctcttcaca
ccgctgcaccagttggagcgggtgcacctcaaccacaacccctgggtgtgcaactgcgat
gtcctgtggctcagttggtggctcaaggagacagtgcccagtaacaccacatgctgtgcc
cgttgccacgcgcccccagtcctgaagggccgctacatcggtgagctggaccagagccac
ttcacatgctacgctcctgtcatcgtagagccacccaccgaccttaatgtcacagagggt
atggctgcggagttgaagtgtcgcactggcacctccatgacgtctgtcaactggctcacc
ccaaatggcaccctcatgacccatggatcgtaccgcgtcaggatctcagtccttcatgac
ggaaccctgaatttcaccaacgttactgtgcaggacacgggccaatacacctgcatggtg
accaactccgcaggcaacaccacggcgactgcagtgctcaacgtgtcctcctccgactcc
agcaacccctacagcttcttcaccaccgtcactgttgaaaccgtggaaacaaacaatggt
gaagatgctgggaggcagtacatcaacgaaacctacgtaccaccagattacctgggtccc
actttttcaggaggggtactgggtaaaggcagggctggattcaccatatctccatctcgc
tcttctctccactctttctccccgcgtgccaccagaaacactgaaaatacagtcacagtg
tcaataatggatgtcacaaacattactggcctggacgacgtgatgaagaccaccaagatc
atcattggctgctttgtggccatcaccttcatggcagccgtgatgcttgtggtcttctac
aagctgaggaagcagcaccagctgcacaagcaccatggccccacccgcgctattgagatc
atcaacgtggaagacgagattggtgccggggccgggagcggcatctcagggggatcgacc
atgcaatctgggtgcggaggagacggaacattgaggatgcatcacccggaaatagtcaac
cttcccaacattgggcgatcagagcatcttaaccattactacaaggccaatcatttcaac
aacaatgtgatgggtctgagcattgggacaggggcaggagtcggtactctaagcaacaag
aacaatctatctccacttaaccagcaaggccaggatatcccaatctcctgtacacaggtt
ccaatcccctccgccactttccagaccatgtctggaaatggcaccaacaccaaccctctt
tctgtttccccacctctgccaatgtccctccccatgcccccaatgggattacatggatcg
atcaagggtttcatgggccagaaccagaacccacaaatggaacctcttctgttcaaggga
aactcaaaggaaaacgttcaagagactcaaatttga
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