Oncorhynchus kisutch (coho salmon): 109870239
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Entry
109870239 CDS
T09179
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X3
KO
K08735
DNA mismatch repair protein MSH2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109870239 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oki03400
]
109870239 (msh2)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
109870239 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
109870239
NCBI-ProteinID:
XP_020316237
Ensembl:
ENSOKIG00005029611
UniProt:
A0A8C7MP42
LinkDB
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Position
LG25:complement(15069692..15091946)
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AA seq
956 aa
AA seq
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MMIPGDPFEVSIKIVNEVASMKVKRDSSMAVQPKQSLSMDAAAEHGFLTYYFSMPEKPDT
TFRVFDRGDYYTVHGTEALFAAKEIFKTNGVIKTLGSGSRKLESVVLSKTNFEALVRDLL
LVKQYRVEVYRNQSKTKDHSWQLEYKASPGNLSQFEEVLFGGAEGRGAGSAGVVAVRLAV
GGDGQRVVGVGYVDASLRTMGVCEFLDGETFCNLEALLVQLSPKECLLPQGDNTDNIRQV
VQRGGVLLSDRKRTEFSSKDMTQDLNRLLRTRKGEANACNVLPELDKQVAMSCLAAVVRY
LELLSDQSNFSSFSLTTLDLSQYMRLDNAAVQALNLFQGSPDDTSGAHSLAGLLNKCRTP
QGQRLVNQWIKQPLMDKNRIEERLDLVECLVNDGEARQTLQDDLLRRFPDLHRLSKKFHR
LSATLQDCYRGYQAVGQIPALLLALEKHQGSHQMLLEAVFISPLRDLQADFIKYQEMIET
TLDMNQVEHHEFLVKASFDPVLSELREKMDTLENSMQSVLNSAARELGLDAGKTVKLECN
SVLGYYLRVTCKEEKSLRNNKTFTTLDVQKNGVRFTNSKLSSLNEDYTRNREEYEEAQNA
IVKEIISIAAGYVDPLQSLSDVIAQLDAVVSFSVASVSAPIPYVRPRLLAADRRRLELQQ
ARHPCLESDADTAFIPNDISFIQGEQSFYIITGPNMGGKSTFIRQVGVISLMAQIGCFVP
CENAELSMIDSCLCRVGAGDSQLKGVSTFMSEMLETAAILRAATKNSLIIIDELGRGTST
FDGFGLAWAISEHIASKIGCFCLFATHFHELTALATHHPTVRNLHVTALTTQHTLTMLYR
VKPGVCDQSFGIHVAELACFPPAVVAMAKQKAAELEEFQEEPSGEEGPEAKKRRSDKREG
EVLIQSFLEKVKSLPAVTMTDQEVKAELRAMKQELVAHNNAYITELLARSAPIHTT
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgatgatacctggagatccgtttgaagtctctattaaaattgtgaatgaggtggcatcg
atgaaagtaaagagagattccagcatggcggtgcaacctaaacagagcttgtccatggat
gctgctgccgaacatggcttccttacctactacttttccatgcctgagaagccagacacc
actttcagggtcttcgaccggggtgactactacacggtgcacgggaccgaagcgctgttc
gccgccaaggagattttcaagaccaacggagtcatcaagaccctgggctcaggtagccgc
aagctggagagtgtggttctcagcaagacaaactttgaggctctggtcagagacctgctg
ctggtgaaacaatacagagtggaagtctacaggaaccaaagcaaaaccaaggatcacagc
tggcaactggagtacaaggcgtctccagggaatctgagccagtttgaggaggttctattt
ggcggggctgagggaagaggggctggttcagcgggggttgtggccgtacggttggctgtc
gggggtgacggacagcgcgtggtgggcgtgggctatgtggacgcgtccctaaggaccatg
ggagtgtgtgagttccttgatggagagactttctgtaacctggaggctctgcttgtgcag
ctgagccctaaggaatgtctgctaccacagggtgacaacactgataacatacgacaggtg
gtgcagcgtggcggtgtgttgctgtcagacagaaagagaacagagttcagtagtaaagac
atgacccaggacctcaaccgactgctacggaccaggaaaggggaggccaatgcctgcaac
gttctgcctgaactagacaaacaggtagctatgtcatgcttggcagcagtggttcgttac
ctggagttgctgtctgaccaatcaaacttcagctccttcagcttgacgacccttgacctg
agccagtacatgaggctggacaacgctgctgtacaagccctcaacctatttcagggttct
cccgatgacaccagtggagcccactcattggccgggcttctgaataagtgccgcacccct
cagggccagcgattggtcaaccagtggatcaaacagccactcatggacaagaacaggatt
gaggagagactggacctggtagagtgcctcgtgaatgacggtgaggccagacagactctt
caggacgatctgttgcggcggttcccagatctccaccgcttgtccaaaaagtttcaccgg
ctctctgcaacactgcaggactgttaccgcggttaccaggccgtgggccagatccctgca
cttctgttggctctggagaaacaccaaggaagtcaccagatgctgttggaggccgtgttc
atctctcctctcagagacctgcaggctgactttatcaagtaccaggagatgatagaaact
acactggatatgaaccaggtggagcaccatgagttcctggtgaaggcgtcgtttgacccg
gtgctctctgagctgagggagaagatggacacactggagaacagcatgcagagtgtactg
aacagcgcagcacgggaactgggtctggatgctggtaagacagtgaagttggagtgtaac
agtgtgttggggtattacctgagggtgacctgtaaagaggagaagagtctgaggaacaac
aaaacgttcacaacgctagacgtccagaagaatggagtccgtttcaccaacagtaagctg
agttctttgaatgaagactacaccaggaacagagaggagtatgaggaggctcagaacgcc
atcgttaaggagatcatcagcatcgctgcgggttacgtggaccccctgcagtcgttgagt
gacgtcatcgcccagctggatgcggtggtcagcttctctgtggcgtcagtctctgctccc
atcccctacgtcaggccacgcctcctggctgcggaccgcaggcgcctggagctccaacag
gccagacacccctgcctggagtcggacgcagacacagccttcatacctaatgatatatcc
ttcatacaaggggagcagagcttctatatcatcacaggtcctaatatgggcgggaagtct
accttcatcaggcaggtgggcgtgatctctctgatggctcagattggctgctttgtcccc
tgtgagaatgcggagctaagcatgattgacagctgtctgtgccgtgtgggggcgggggat
agccagctcaagggcgtgtctacatttatgtccgagatgctggagactgcagctattctc
cgcgctgccacgaagaactctctaataataatcgatgagttgggtcgcggaacatctaca
ttcgatggctttggtctggcctgggccatcagtgaacacatcgcctccaagattggctgc
ttctgtctgtttgccactcacttccatgagcttacggcgttggccacacaccaccccacc
gtccgcaacctgcacgtcaccgctctgaccactcaacacacactcaccatgctctacagg
gtcaaaccaggtgtgtgtgaccagagttttgggatccatgtggcggagttggcgtgtttc
ccgccggcggtggttgccatggcaaagcagaaggctgcagaactggaggagtttcaggag
gagccgagtggggaggaggggccagaggccaagaaacgacgcagcgataaacgggaggga
gaggtattgatccagtcgtttctggagaaggtgaaatctctgccggcagtcaccatgact
gaccaggaggtgaaggcggagcttagagccatgaagcaggagcttgttgcccataacaac
gcttacatcacggagctcctggcacgctccgcccctatccacacaacctga
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