KEGG   Oncorhynchus kisutch (coho salmon): 109870292
Entry
109870292         CDS       T09179                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X2
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
oki  Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:oki00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:oki04121]
    109870292 (hltf)
   03400 DNA repair and recombination proteins [BR:oki03400]
    109870292 (hltf)
Enzymes [BR:oki01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     109870292 (hltf)
Ubiquitin system [BR:oki04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109870292 (hltf)
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    109870292 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-RING_5 DEAD zf-C3HC4_4 ResIII zf-ANAPC11 RING_XB3-XBAT31 zf-rbx1 Prok-RING_4 zf-Nse zf-RING_6 zf-RING_4
Other DBs
NCBI-GeneID: 109870292
NCBI-ProteinID: XP_020316322
Ensembl: ENSOKIG00005008638
LinkDB
Position
LG25:complement(25570402..25581616)
AA seq 974 aa
MQSRRWFGGAGFSFADDPVTETLSQAIRGTGEELDREPDTGVLFGSLRGSVVGLRYYTGV
VNKGEMVSLVRQPQNPYDRNAVMVANVYGSQVGHIKRELAVLLANIMDNNLARVEGVVPF
GVTNQFTMSVVLSFWGREENRDAVVRQITSRSFKLQSGPTGFMCADGSRDLPRKSVLLTA
EELKNAFDNLFENLMEDKIGEREAVEAVCTPLLPHQKQALSWMCVSENNAALPHFWEVKG
KLFYNTLTHSSVRERPQRVRGGILADDMGLGKTLTTIALILSNFHHGKPLCEPEKSSPEP
KASTTARKNPEGKSGDGDQAEVSVAPAGHSPCMRANQAETQVVCVESVDVVQEDVVEDGD
KDLVSEKKAKGRPQGGKAKATTTKKAAKTKGKAVSTSRKGGAVLEDLDFAAALSGITQGA
PQKKSVGKSVVSPVEAASSQSTDDPAARATLIICPLSVLSNWLDQLDQHVRADVKLNVYL
YYGSERNRDTHFLSSQHMVLTTYNVLSADYSGSASPLHTVSWLRVVLDEGHIIRNPNTQQ
SKAVLKLNTQRRWILTGTPIQNNLRDLWMLVAFLRLKPFDVREWWNRVIQRPVTQGDKTG
LQNLQALVKCVTLRRTKTSRVCGRPLVSLPERSVRIEEVELTQKEREEYELAHTEGRTTI
SRYVAEGTVLRNYADVLAILVRLRQFCCHPGLLGKTTTHTGVVAVTPAELRERLIMKLRL
VLGTGSDEECAVCLDSVRLPVITHCAHVYCRPCIAEVIRSEQEQARCPLCRGQIKASELV
EFPLEEEEESNLLENWRSSSKVEALMSSLLRLRSEDDSIRSLVVSQFTRFLTILEIPLRE
EGFKFVRLDGTMSQKRRAQVIQEFQSDAPGSPLIMLLSLKAGGVGINLSAASRVFLMDPA
WNPAAEDQCVDRCHRLGQKRDVVITKFIVKGSVEENMVKIQRQKQDLVEKAFGTKNPSER
KTSRVDEIRALMEL
NT seq 2925 nt   +upstreamnt  +downstreamnt
atgcagtccaggcgatggtttggtggggctgggtttagctttgcagatgacccggtcaca
gagacgttgtcccaggccatccgaggcacaggagaagagctggaccgagagccagacact
ggggtgctgtttggcagcctacgtgggagcgtggtaggcctccggtattatactggcgtg
gtgaacaaaggggagatggtgtctctggtgcgtcagcctcagaacccctacgaccgtaat
gcggtgatggtggctaacgtctatggcagtcaggtggggcacatcaaacgagagctagcc
gtgttgttggctaacatcatggacaacaacttggccagggtggaaggggtggtgccgttc
ggggtgacaaaccagttcaccatgtctgtagttctgtccttctgggggagagaggagaac
agagatgcagtggtgaggcagataacttcccgcagcttcaaactgcagagtgggcctaca
ggattcatgtgtgcagatggttctagagatctgcccaggaagagtgtcctactgactgca
gaagagttgaagaatgcatttgacaatttatttgaaaacctgatggaggataagattgga
gagagagaggcagtggaggcagtttgtactccgctgctgccccaccagaagcaggctctg
agctggatgtgtgtgagtgaaaacaacgctgcgctgccccacttctgggaggttaagggg
aaactgttctataacacactcacacactcctctgttagagagagaccgcagagggtccgg
ggcggcatactggctgacgacatgggactggggaaaacgttgaccaccatcgctctgatc
ctctccaacttccaccacgggaaacctctgtgtgaaccggagaagtcttcccctgaacct
aaggcctctaccaccgcaaggaaaaaccctgaagggaagagtggcgacggggatcaggca
gaagtgtctgtggctcccgctggtcactccccttgtatgagagccaatcaggctgaaacc
caggtggtgtgtgtggagtcagtggacgtggtgcaagaggatgtagtggaggatggagac
aaggacttggtgtctgaaaagaaagcgaagggaaggccacagggaggcaaagccaaggcc
accacaacaaagaaagctgctaagaccaaagggaaagcagtcagcacctcaagaaaaggg
ggtgctgtgttggaggacctggactttgcagcagcactgagtgggataacacagggagct
cctcagaaaaagagtgtcggtaaaagtgtagtttcgccggtggaagctgcctcttcccag
agcacagacgacccagcagccagagccactctcatcatctgccccttatcggtactcagc
aactggctggaccagttggatcaacatgtgcgagcggacgtcaagctgaatgtgtatctg
tactatggctcggaacgcaacagggacacacacttcctgtcctcgcagcacatggtcctc
accacctacaacgtgctttctgctgactactcgggcagtgctagtcccctccatacagtg
agctggttgagagtggtcttggacgagggccatattatcagaaacccaaacacccagcag
agcaaggctgtactcaaattaaacacacagagacgctggatactcacaggcactcccatc
cagaacaacctgagggatctgtggatgctggtggcttttctgcgtcttaagccgttcgac
gtgagagagtggtggaacagagtcatacagagacctgtcacacagggggacaagaccggc
ctgcagaatctgcaggctctggtgaagtgtgtcacgctgcgtcgtacgaagaccagccgt
gtgtgtggtcggcctctggtctctctgccggagaggagtgtcagaatagaggaagtggag
ctgacacagaaggagagggaggaatacgagctggcacacacagagggacgcaccaccatc
agcaggtacgttgcagaggggaccgtcctcaggaactacgcagatgttctggctatccta
gtcaggctgagacagttctgctgccaccctggcctactgggaaagaccactacacacaca
ggtgtggtagctgtgactcctgcagagttgagagagcgtctgataatgaaactgaggctg
gtgctgggcactggctctgatgaagagtgtgctgtatgtctggactctgttcgtctgcct
gtcatcacacactgtgcacacgtctactgcagaccctgcatcgcagaggtcatacgcagt
gagcaggagcaggcgcggtgccctctgtgcagaggccagatcaaggccagtgaactagtg
gagttccctctggaggaggaggaggagagtaacctcttggagaactggaggagcagctcc
aaggtggaggctctaatgtctagcctgctcagactgcgcagtgaggacgacagcatcagg
agtctggttgtctctcagttcacacgcttcctcactattctggagattccactcagggag
gagggtttcaagtttgtacgtctggacggcactatgagccagaaaaggcgggctcaggtc
attcaggagttccagagcgacgcccctggcagcccattgatcatgctgctgtcactcaaa
gccggaggggtggggataaacctcagcgctgcatcccgcgtcttcctcatggacccagca
tggaacccagcagcagaggaccagtgtgtggaccggtgtcaccgcctcggccagaagaga
gatgttgtcatcactaagttcatagtgaagggctccgtggaggagaacatggtgaagatt
cagaggcagaagcaggatctggtggagaaggcttttggcaccaagaaccccagtgagagg
aagacgtcacgtgttgatgaaatccgagccctgatggagctgtag

DBGET integrated database retrieval system