Oncorhynchus kisutch (coho salmon): 109870393
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Entry
109870393 CDS
T09179
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X2
KO
K10858
DNA mismatch repair protein PMS2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03430
Mismatch repair
oki03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
109870393 (pms2)
03460 Fanconi anemia pathway
109870393 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oki03400
]
109870393 (pms2)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
109870393 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
109870393
NCBI-ProteinID:
XP_020316471
Ensembl:
ENSOKIG00005010008
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All DBs
Position
LG25:complement(22190139..22200891)
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AA seq
882 aa
AA seq
DB search
MTDASSEPAGIIKAIDRHSVHQICSGQVVLTLATAVKELVENSIDAGATNVDIKLKDSGT
ELVEVSDNGKGVEEANFEGLTLKHHTSKLKDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHEAAQVGTKLVFDHNGHLTQRSPHPRQQGTTVSLSQLFYTLPVRHKEFQRNIKKEYTK
MIHILQSYCIVSTGVRITCTNQTGQGKRTPVLCTSGRQSMRDNIGAIFGPKQLQSLLLFQ
QLSPTDNIKEDYGLSNADLPKDLFAISGFVSRGDHGVGRSATDRQFFYINNRPCDPSKVS
KVVNEVYHTFNRHQYPFVALNITVASECVDVNVTPDKRQIFLQEEKLLLAIMKSSLIAMY
ETGVNKISLNHMSFSTTSKHTLQDSYRPAEPPSDMEGCQVPSSETAPEAGDDSESVIPSP
QSSLNLAGLKAAFSMHNSPGSGSKSSTAKAANTGPTQKKLQSFFGGSDKSQNTHGPSLQY
PLKISRGAVKCSPVGRSVLEGFRYGMTPDSNIDSGRESVLSEHSSPTATPESLCATTGSE
FNSPDNIVDDEPIIKSEALNEPFNEERTVAKHFDRPIEPRISEMSEEMSFSPNAKKAKLE
DGQFSLEYKTTHSAGSEGSSGSNVDAPVCVQKRTVPLQFSVQELFGRVRRLQEQRREKAE
DRLRYRRFRAKISPGENQSAEDELKKEICKDSFKDMEIIGQFNLGFIITKLNSDIFMIDQ
HATDEKYNFEMLQQHTALQGQRLIVPQNLHLTGVSENVLMENLEIFRKNGFDFLIDEEAQ
VMERVKLVSLPTSKNWTFGPGDIEELIFMLSDSPGVMCRPSRVRHMFASRACRKSVMIGT
ALSTSEMKKLVVHMGEIEQPWNCPHGRPTMRHLANLNIISED
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgcaagctctgaaccagctggaatcatcaaggccattgacaggcactctgtg
catcagatctgctctggacaagttgtgttgaccctggctacagctgtcaaggaactggtt
gaaaacagtattgatgcaggggccaccaatgttgacattaaattgaaggacagcggaaca
gagcttgtcgaagtgtctgacaacggcaaaggagtggaagaggctaactttgaaggacta
accttgaagcaccacacatcgaagctgaaggatttctctgaccttatccacgtggaaaca
tttggcttccgaggggaagccctcagctctctttgtgccctcagtgacctcagtgttgtg
acctgtcatgaagctgcacaggtgggcaccaagctggtgtttgaccacaacggtcacctg
acccaacggtcgccccaccccaggcagcagggcaccacagtcagcctgtcgcagctcttc
tacaccctgcccgtccgacacaaggagttccaacgcaacatcaaaaaggaatacaccaag
atgattcacatcctccagtcctactgcatcgtctcaacaggggttcgtatcacctgcacc
aaccagacgggacagggcaaacgcaccccggtcctctgcaccagcggcaggcagagcatg
agagacaacattggagccatatttggccccaaacagttgcagagtctgcttctattccag
cagctctcgccaacagacaacatcaaggaggattatggactgagtaatgcagacctaccc
aaagacctcttcgcaatctccggttttgtgtcacgaggggatcatggtgtcgggagaagt
gccacagacagacagttcttttacatcaacaaccgcccgtgtgatccttctaaggtctcc
aaggttgtgaatgaagtgtatcacacctttaacagacatcagtatccgtttgttgcattg
aacatcactgttgcctcagagtgtgtggatgtgaacgtcactccagacaagcgtcagatc
ttcctccaggaggagaaactcctgctagccatcatgaagagctctctcatcgccatgtac
gagactggagtcaacaagatcagcctcaaccacatgtccttctccaccaccagtaaacac
actttacaagattcctacagaccagcagagcctccatctgatatggaaggatgccaggtt
ccatcatctgagacggctcctgaagctggagatgattcagaatctgttataccaagcccc
cagtcttctctcaacttggctggattgaaggctgctttctccatgcacaacagcccaggc
agtgggtccaagtcgagcactgctaaagctgctaacactggtccaacccagaagaaactg
cagtctttctttggaggctctgacaagagtcagaacacacatgggccaagtttacaatat
cctttgaaaatcagtcgaggtgcagtgaaatgttcccctgtggggaggtctgtgctggag
gggttcaggtatggaatgacgccggacagcaacatagactctggcagagagagcgtcctg
tcggagcacagctcccccacagccaccccagagagtctctgtgctactacagggtcagag
ttcaactcaccagacaacatagtagatgacgaacccattataaaaagcgaggcactcaat
gaacctttcaacgaggaacgcacagttgctaagcacttcgaccggccgattgaaccacgt
atttcagagatgtctgaggaaatgagcttcagtcccaacgccaagaaggccaaactagag
gatggtcagttctctttagagtacaagaccacacattcagccggttctgaaggatcctct
gggtctaatgtggacgcaccagtctgtgtacagaagaggacagtgccactgcagttctct
gtacaggagctgtttgggagggtgagaaggcttcaggaacagcgtagagagaaggcggaa
gacaggctacgctacagacgcttcagagccaaaatcagccctggagagaatcagagtgct
gaggatgagctgaagaaagagatatgcaaagacagttttaaggacatggagataatcggc
cagtttaacctgggcttcatcataactaagctcaactctgacatcttcatgatagaccag
cacgccaccgacgagaagtacaactttgagatgcttcaacaacacactgcactgcaagga
cagagactcattgttccacagaatctccacctcacaggggtcagcgagaacgttctcatg
gagaaccttgagatcttcagaaagaatggctttgatttcctcatagatgaggaggcccag
gtgatggagcgggtgaagctggtgtccctgccaaccagtaagaactggacatttggtccg
ggggacatcgaggagctcatctttatgttgagtgacagcccaggggtcatgtgtcggccg
tctcgtgtcaggcacatgttcgcctccagggcctgcaggaagtcagtgatgatcggtact
gctctgagcaccagtgagatgaagaagcttgtggttcatatgggggagatagagcagcct
tggaactgtccacatggcagacccactatgagacaccttgcaaacttgaacatcatctca
gaagactga
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