KEGG   Oncorhynchus kisutch (coho salmon): 109870492
Entry
109870492         CDS       T09179                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U3 small nucleolar RNA-interacting protein 2-like
  KO
K14793  ribosomal RNA-processing protein 9
Organism
oki  Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:oki00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:oki03009]
    109870492
Ribosome biogenesis [BR:oki03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    109870492
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_EML_2 WDR55 EIF3I Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_IP5PC_F Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_DCAF12 Beta-prop_WDR75_2nd WD_LRWD1 Beta-prop_WDR19_1st Beta-prop_NWD2_C WD40_like WDR54
Other DBs
NCBI-GeneID: 109870492
NCBI-ProteinID: XP_020316637
Ensembl: ENSOKIG00005036200
LinkDB
Position
LG1:43564348..43567711
AA seq 347 aa
MVAKDLLPPDVSEIRLLRGHKLPVTCLVISPDDQYVFSASKDCSIIKWDVESGKRLHTIA
GGRKGTEDRHVGHTAHVLCMXLSSDGKYLATGDMNKLIVIWEASTCKHLYKFTGHRGPVS
GLSFRRGTHDLYSASHDRSIKVWNVDENAYVETLFGHQDAITGLDSGSRERCVTAGGRDR
TVRVWKIAEESQLVFHGHEGSIDCIQLINEEHMITGANDGSVSLWSVNKKKPLSMVKAAH
GRHGDSGLEQPYWVAPVAALQNSDTVASGSHNSKVQLWKCVQGFRHLEPLFGIPVIGFVN
SLKFXGKFLVAGVGQEHRLGRWWRLKEAKNGLYIIPLKRRQEEVNGE
NT seq 1044 nt   +upstreamnt  +downstreamnt
atggttgcaaaagatctcctgccaccagatgtgtcagagattcgtctgttgaggggccac
aagctgccagtcacctgtctggtaatttctcccgatgaccaatacgtattttccgcttcc
aaagactgctccatcatcaaatgggatgttgagagtggtaagagacttcatacgatagct
ggtgggaggaaaggaacagaggatcgccatgtgggacatacggcccatgtcctatgtatg
nntctatcatcggatggcaaatacctggctactggagacatgaataagttgatcgtgatc
tgggaggcatcaacatgtaaacacctgtacaagtttacaggacatagaggcccagtatcg
ggcctatccttcaggaggggcacccatgacttgtacagtgcttctcatgaccgctccatc
aaggtgtggaacgtggacgaaaacgcctatgtggaaacactgtttggtcaccaggatgcg
atcacagggctggacagtgggagtagggagcgctgtgtgactgcaggggggagggaccgc
actgtgagggtgtggaagatcgctgaggagtcccagctagtgttccatggccatgagggc
tccatcgactgtatccagctcattaacgaggaacacatgataacaggcgctaatgatggc
tctgtctccctgtggagtgtgaacaagaagaagcctcttagcatggtgaaggcagcccac
ggtcggcatggcgactcaggactggagcagccctactgggtagcgcccgtggcagctctg
cagaattctgacaccgtagcctcaggttcccacaactctaaggtgcagctgtggaaatgt
gttcaggggttccgtcatctggagcctctcttcggcatccctgtgattggttttgtcaac
agtctaaagttcnntgggaagttcctggtggcaggagtaggacaggagcacaggcttggt
cgatggtggagactgaaagaagcgaagaacggactctacattattcctctgaaacgacga
caagaagaggtgaatggggagtag

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