Oncorhynchus kisutch (coho salmon): 109870617
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Entry
109870617 CDS
T09179
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oki01002
]
109870617
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109870617
Enzymes [BR:
oki01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
109870617
Peptidases and inhibitors [BR:
oki01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
109870617
Ubiquitin system [BR:
oki04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
109870617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ARM_UBP24_USP9X-Y
DUF3517
UCH
UCH_UBL1
UCH_1
FAST_1
Vps23_core
DUF2014
Motif
Other DBs
NCBI-GeneID:
109870617
NCBI-ProteinID:
XP_020316772
Ensembl:
ENSOKIG00005000925
LinkDB
All DBs
Position
LG2:68245854..68323333
Genome browser
AA seq
2639 aa
AA seq
DB search
MTATTRGSPVGGNDSQSGQGQAPDAQSQSQPPLPQNQTLSPNSSNENSPVSPPDEQGQGD
GPPQLEEEVEEPAFPHTDLTKLDDMINRPRWVVPVLPKGELEVLLEAAIELSKKELDVKC
EACQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLEL
LAMAFNPHCKFHIYNGTRPSETVPAGAQLADDELFARPPDPRSPKVGSEFKGWLVDLINK
FGTLNGFQTLHDRFISGQALNVQIIAALIKPFGQCYEFLTLHTVKKYFLPVIEMVPQFLE
NLTDEELKKEAKNEAKNDALSMIIKSLKNLASKVPGQEETVKNLEIFRLKMILRLLQISS
FNGKMNALNEVNKVISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNHILSIVLRDSLHQP
QYVEKLEKILRFVIKEKALTMQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDH
LFDCFKASWTNASKKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQ
ALSAHIKILDYSCSQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNL
RKKMPINIQTNLVGQTQRSPHVFYRHDLINQLQHNHALVTLVAENLSAYMETMRQFSKAE
QAEFDPQTVRVGSRYSHVQEVQERLNFLRFLLKDGQLWLCAPQAKQIWKCLAENAVFLCD
REACFKWYSKLMGDEPDLDPDINKDFFENNVLQLDPSLLTENGMKCFERFFKAVNCREGK
LVAKRRAYMMDDLELIGLDYLWRVVIQGSDDIASRAIDLLKEIYTNLGPKLQVNQVEIHE
DFIQSCFDRLKASYDTLCVLEGDKDSINCARQEAIRMVRVLTVLKEYINECDSDYHEERT
ILPMSRAFRGKHITLIVRFPNQGRQVDDLDIWSHTNDTIGSVRRGILTRIKANATHTKIE
LFIGGEVVDPADDRKLIGQLNLKDKTLITAKLTQVSANMPSSPDSSSDSSTGSPGNHGNH
FSEGPNPEVESCLPGVIMSLHLRYVSFLWQVADLGCSPNMPLLRDGARVLMKLMPPDNST
VENLRGVCLDHAKLGENGLSPTLDSRFFGPSPSQVLYLIEVVYALLMPASSTLGEDASDF
QYNFLKSGGLPLVLSMLTRNNFLPSADMETRRGAYLNALKIGKLLLTAVGFGHVKAVAEA
CQPNAEGTTPVSPINQATHDQALVLQSALQNLPNPASECMLRNVAIRLAQQISDENFFQA
SKYIPEICVIRAVQKIAWASGCGTIQLVFSSNEELSKIYEKTNVVKEPDGEDEQVCCEAL
EVMTLCFALLPTALDTLSKEKAWQTFIIDLLLHCHSKSVRQMAQEQFFLMATRCCMGHRP
LLFFITLLFTVLGSTAKERAKHAGDYFTLLRHLLNYAYNSNINLPNAEVLLNNEIDWLKK
IRDEVKRTGETGVEETILEGHIGVTKELLAFQTPEKKYYIGCENGGANLIKELMDDFIFP
ASNVYLQYMKSGEFPTEQAIPVCSSPASINAGFELLVALSVSCVRNLKQIVNMLTDMYYL
GCEALTEWEYLPPVGPRPTKGFVGLKNAGATCYMNSVIQQLYMIPPIRDGILAIEGTGTD
VDDDMSGDEKQESESNADPRDEVFSYNHQFDDKPSLSKSEDRKEYNIGVLRHLQVIFGHL
ASSRLQYYVPRGFWKQFRLWGEPVNLREQHDALEFFNSLVDSLDEALKALGHPAMLSKVL
GGSFADQKICQGCPHRYECEESFTTLNVDIRNHQNLLDSMEQYVKGDLLEGANAYHCEKC
NKKVDTVKRLLIKKLPPVLAIQLKRFDYDWERECAIKFNDYFEFPRELDMEPYTVAGVAK
LEGDDVNPENQVIQQNEPSDPEPPGSSKYRLVGVLVHSGQASGGHYYSYITQRNVGVADG
ERNRWYKFDDGDVTECKMDDEEEMKNQCFGGEYMGEVFDHMMKRMSYRRQKRWWNAYILF
YERMDSLDKDSELVKYIQELTISSSSNNKPSHQVKMPNVIECSVRKQNVQFMHNRMQYSL
EYFQFVKKLLTCNSVYLNPPPGQDHLLPDAEEMAMISVQLAARFLFSTGFHTKKVVRGAA
SDWYDALCVLLRHSKNVRYWFAQNILFAYANRFSEYLLECPSAEVRGAFAKLIVFIAHFS
LQDGPCPPPTASPAGASTQSQACDNLRLSDHLLRAVLNLLRREVSEHGRHLQQYFNLFVM
YANLGLAEKTQLLKLSVPATFMLVALDEGPGPPIKYQYAELGKLYTVVSQLVRCCDVAAR
MQSSINGNPPLPNPYGDANQTTPVMPVQQLVGEILFVRTSYVKKIIEDCSNSEETVKLLR
FSCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLLQILLIEDSWQTHRIHNVLKGIPD
DRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSSCSVAYQILQSNGDLKRKWTWAVEWLGD
ELERRPYTGNPQYTYNNWSPPVQSNETSNGYFLERSHSARLTLAKACELCPEECHLTKPG
EAMSEEEAAMRKSSSPQQLLPGDGTGPQQHTEPDDQEASEDQDTSPPEDTSLYPHSSPGT
TTQFQQPYTGPAAQLMNNPQHPGPAPSTPGPDPGPRAQENWESTEEVPSTSTAPTSPKE
NT seq
7920 nt
NT seq
+upstream
nt +downstream
nt
atgacggccaccacgcgtggctctccggtggggggcaacgacagccagtcgggccagggc
caggcacccgatgcccagagtcagagtcagcccccgctgccacagaaccagacgttgtcc
cctaactcgtccaatgagaattctccagtgagccccccggatgagcagggtcagggggat
ggacccccacagctggaggaggaggtggaggagccagccttccctcacacagacctgaca
aagctggatgacatgatcaacagaccccgctgggtggttccagttctgccaaagggagag
ttggaggttcttctagaagctgctatagagcttagtaaaaaggaacttgatgtgaagtgt
gaggcatgccagaggtttttcagggatggcctgaccatctctttcaccaagattctcaca
gacgaggccgtcagcgggtggaagtttgagatacataggtgtatcatcaacaacacccac
cggctggtggagctgtgtgtggccaagctctctcaggactggttccccttgctggagctg
ctggccatggccttcaacccccactgcaagtttcacatctacaatggcacgaggccctct
gagacggtgcccgccggggcgcagctggcagacgacgagctctttgcccgcccccctgac
cctcgctctccaaaggtagggtctgaattcaagggctggttggtggatttaattaacaaa
ttcggcacgttaaacgggtttcaaacactgcacgatcgcttcataagtggccaagcactg
aacgtccagatcatcgctgcccttatcaagcctttcgggcagtgttacgagtttctcacg
ttgcacacggtgaagaagtacttcctgcccgtcatcgagatggttcctcagttcctggag
aatctgacagacgaggagctgaaaaaggaagccaagaacgaagccaaaaatgatgccctg
tccatgatcatcaagtccctgaagaacctggcctccaaggtgcctgggcaggaggagact
gtcaagaacttagagatttttaggttaaaaatgattcttaggttattgcaaatttcctct
tttaatggcaaaatgaatgcactaaacgaagtaaacaaagtcatctccagtgtgtcctat
tacacacatcggcatggcaaccccgaggaggaggagtggctaactgcagaacgcatggcg
gagtggatccagcagaaccacatcctgtccattgtgctgagggacagcctccaccagcct
cagtatgtagagaaactagagaagatactgcgcttcgtcatcaaggagaaagctcttacc
atgcaggacctggacaacatctgggctgcacaggctggtaaacatgaggccattgtgaag
aacgtacacgacctattggccaagctggcctgggacttctctcctgagcagctcgaccac
ctctttgactgcttcaaggcgagttggacgaacgccagtaagaagcaacgtgagaagctg
ttggaactgatccgtcgcctggcggaggacgacaaggatggcgtgatggcccacaaggtg
ctgaacctgttgtggaacctggctcacagcgatgacgtgcctgtagacatcatggaccag
gcactcagtgctcacataaagatactggactacagttgctctcaggatagagacacgcag
aagatccagtggatcgatcgcttcatagaagagttgcgcaccaatgacaaatgggtgatt
cctgcactaaagcagatccgagagatctgtagcctgttcggagaggctcctcagaatctc
agaaagaaaatgcctattaacatacaaacgaacttagtgggtcagacccagaggagtcct
catgtgttctatcgtcatgacctgattaaccagctgcaacacaaccatgccctggtcacg
ctggtggctgagaacctctctgcctacatggagaccatgaggcagttctctaaagccgag
caggcggagtttgacccccagacggtgagggtagggagccgctacagccacgtacaggaa
gtccaggagagactcaacttcctgaggttcctgctgaaggatggccagttgtggctctgt
gctcctcaggccaaacagatctggaagtgcctggctgagaacgcagtctttctttgtgac
cgagaggcctgcttcaaatggtactccaagctgatgggtgatgagccagacctggacccg
gacatcaacaaggacttctttgagaacaacgttctgcagctggacccgtctctgctcacg
gagaacggcatgaagtgctttgagaggttcttcaaggccgtcaactgcagggaaggcaag
ctggtggccaaacgtagggcctacatgatggacgacctggaactcataggcctggactac
ctctggagggtcgtaattcaagggagtgatgacatcgccagtcgagccatagaccttctg
aaagagatctacaccaaccttggaccaaaactacaagtcaatcaggtagagatccacgag
gatttcatccagtcatgttttgaccgtctgaaggcgtcgtacgatactctctgtgttctg
gaaggggacaaggacagcatcaactgtgcccggcaggaggccatccgcatggtccgtgtg
ctcactgtgctcaaggagtacatcaacgagtgtgacagtgactaccatgaggagaggacc
atactgcccatgtccagggcgtttcgggggaagcacatcacgttgatcgtgcgtttccct
aaccagggccgtcaggtggatgacctggacatctggtctcacaccaacgacaccattggc
tcagtgcgccgcggtatcctcacacgcatcaaggccaacgccacgcacaccaagatagag
ctcttcattggcggggaggttgttgacccagccgacgacaggaagctgattggccagctc
aacctgaaagacaaaacgttgatcacagccaagctgacccaggtgagtgccaacatgccc
tccagcccagacagctcctcggactcttccactggctcaccgggtaaccatggcaaccac
ttcagcgaagggcccaaccccgaggtggagagctgcctccctggagtgatcatgtctctc
cacctgcgctacgtctccttcctgtggcaggtagcagacctgggctgtagccccaacatg
cctctgctacgagacggagccagagtactgatgaagctgatgcctccagataacagtacc
gtggagaacctgcgtggtgtatgtctggaccatgccaagctgggagagaacggcctcagc
ccaacactggactcacgcttctttggcccctcgccatcacaagtcctctacctcatagag
gtggtgtatgccctgctcatgccagccagctccacattgggtgaggacgccagcgacttc
cagtacaacttcctgaagagtggcgggctaccgctggtactgagcatgctcacgcgtaac
aacttcctgccgtcggccgacatggagacgcggcgaggggcgtacctcaacgctcttaag
atcggcaaactgctgctcaccgctgttgggttcggacacgtcaaagctgtggccgaggct
tgtcagcccaacgctgaggggaccacacccgtctcaccgattaaccaggccactcacgac
caggctttggtcctccagagtgccctgcagaacctccccaaccctgcctctgagtgcatg
ctccgcaatgtagctatacgcctggcccaacagatctctgacgagaacttcttccaggcg
tcgaagtacatccctgagatctgtgtgatccgggcggtgcagaagatagcatgggcttca
ggctgtggcaccatacagttggtcttcagctccaatgaagagctcagcaaaatctatgag
aagacaaacgtggttaaagagccggacggggaggatgagcaggtgtgctgtgaggccctg
gaggtcatgaccctgtgtttcgccctgctgcccaccgctctggacacactcagtaaggag
aaggcctggcagaccttcatcatagacctgctactgcactgccacagcaagtcagttcgt
cagatggcccaggagcagttcttccttatggccaccaggtgctgcatgggccaccgaccc
ctcctcttcttcatcaccctcctcttcactgtgctggggagcacagctaaagagcgggcc
aagcatgctggggactacttcaccctgctcaggcacctcctgaactacgcctacaacagc
aacatcaacctgcccaacgcagaggtgttgctcaacaacgagatcgactggctgaagaag
atcagggatgaggtgaagaggacaggggagacgggcgttgaggagaccatcctggaggga
cacatcggagttaccaaggagttgctggccttccagacaccagagaagaagtactacatc
ggctgtgagaatggaggggccaacctcatcaaggagttgatggacgacttcatcttccca
gcatctaacgtgtacctgcagtacatgaagagcggggagttccctacggagcaggccatc
cctgtctgtagcagccccgcctccatcaacgcaggcttcgagctgctggtggctctgtca
gtgagctgtgtccggaacctcaagcagatcgtcaacatgctcactgacatgtactaccta
ggttgtgaagctctgacagagtgggagtatctccctccggtggggccgcggcccactaaa
ggctttgtggggctgaagaacgctggggccacctgctacatgaactcagtcatccagcag
ctttacatgatccctcccatccgcgacggaatcctggccatcgagggcaccggcaccgac
gtggacgatgacatgtccggcgacgagaagcaggagagcgagagtaacgcagacccgcgg
gatgaggtgtttagctataaccaccagtttgacgacaagccgtcgctcagtaagtcggag
gacaggaaggagtacaacattggggtgctgcgccacctacaggtcatctttggtcacctg
gcctcctccagactgcagtactacgtaccccggggcttctggaaacagttcaggttatgg
ggtgagccggtgaacctgcgagagcagcacgatgccctggagttcttcaactccctagtg
gacagtctggatgaggctctgaaggccctgggtcacccggccatgcttagcaaggtgctg
gggggatccttcgccgaccagaagatctgccaggggtgcccacatagatatgagtgtgag
gagtcgttcaccactctgaatgtagacatcaggaaccaccagaacctgttggactctatg
gagcagtatgtcaagggagacctgctggagggagccaacgcataccactgtgagaagtgc
aacaagaaggtggacacagtgaagcgtctgctgatcaagaagcttcctccagtgctggcc
atccagctgaagaggtttgactacgactgggagagggagtgtgccatcaagttcaatgac
tactttgagttccccagggagctggacatggagccctacactgtagccggggtggccaag
ctggagggggacgacgtcaacccagagaatcaggtgatccagcagaacgagccctctgat
ccagagcccccgggcagctccaagtaccgcctggtgggggtgctggtccactcaggccag
gccagcggcggacactactactcctacatcacgcagaggaacgtgggcgtggccgacggc
gagcggaaccgctggtacaagtttgacgacggagacgtgactgagtgcaagatggacgac
gaggaggagatgaagaaccagtgcttcggaggggagtacatgggcgaggtgtttgaccac
atgatgaagaggatgtcctaccggcgccagaaacgctggtggaatgcctacatcctcttc
tacgaacgcatggactcattggacaaggacagtgagctggtcaagtacatccaggagctg
accatctcgtcctcgtccaacaacaagccgtcgcaccaggtcaagatgcccaacgtgatc
gagtgcagcgtgcgcaagcagaacgtgcagttcatgcacaaccgtatgcaatacagcctg
gagtatttccagtttgttaagaaacttctgacctgtaacagtgtctatttaaaccctccg
ccaggacaagaccatctactgcccgatgcagaggagatggctatgattagtgttcagctg
gctgctaggttcctcttcagcactggtttccacaccaagaaagtagtgaggggggccgcc
agtgactggtatgatgcgctgtgcgtcctgctgagacacagtaagaatgtacgctactgg
tttgcacaaaacatcctgtttgcctacgccaaccgcttctccgagtacctgctggagtgc
cccagcgctgaggtccggggcgcgttcgccaaactcatcgtcttcatcgcacacttctcc
cttcaagacggaccctgccccccgcccacagcatcccctgccggcgcctccacccaatca
caggcgtgtgataacctgcgtctcagtgaccacctgttgagggctgtgttgaacctcctc
aggagagaggtgtcagagcatggccgacacctgcagcagtacttcaacctcttcgtcatg
tatgccaacctagggctggcagagaagactcagttgttgaagctgagtgtcccagctacc
ttcatgctggtggctctagacgagggacccggtcctcccatcaagtaccagtatgcagag
ctggggaaactctacaccgtggtctcccagctggtgcgctgctgtgatgtggccgcacgc
atgcagtcatccatcaatggtaacccccctctccctaacccgtacggcgatgccaaccag
accaccccggtgatgcctgtgcagcagctggtgggagagatcctttttgttaggaccagc
tacgtgaagaagatcatcgaggactgcagcaactcagaggagacagtcaagctgctgcgc
ttcagctgctgggaaaatccccagttctcctctactgtgctatcagagctgctctggcag
gtggcgtactcctacacctacgagctgaggccttacctggacctgctgctgcagatcctg
ctcatcgaggactcctggcagacacacaggatccacaacgtgttgaagggtataccagac
gacagggacggcctgtttgacaccattcagcgctccaagaaccactaccagaaacgggcc
taccagtgtatcaagtgcatggtggccctgttcagcagctgctctgtggcctaccagatc
ctacagagtaacggggacctgaagcgtaagtggacctgggcggtggagtggctgggggat
gagctggagaggagaccctacacagggaacccccagtacacctacaacaactggtctcca
cccgtccagagcaacgagacctccaacgggtacttcctggagcgctcgcactctgcacgt
ttgaccctggccaaggcctgcgaactttgccccgaggagtgtcacttaacgaagcccggg
gaggccatgtctgaagaagaagctgccatgcggaaatcgtcctcgccacagcagcttttg
ccaggggacgggacaggaccacagcaacacactgagcccgatgaccaggaagcctctgaa
gatcaggacacctcccctccagaggacacctccctctacccacactcatctcctgggacg
accacacagtttcagcagccatacacaggccctgctgcccagctcatgaacaacccccag
caccctggccctgccccttctaccccaggccctgaccccggcccaagagcacaagagaac
tgggagagcactgaggaggtcccctccacctccacggcccctacctcacctaaggagtaa
DBGET
integrated database retrieval system
