KEGG   Oncorhynchus kisutch (coho salmon): 109870900
Entry
109870900         CDS       T09179                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109870900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oki03041]
    109870900
   03036 Chromosome and associated proteins [BR:oki03036]
    109870900
Spliceosome [BR:oki03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    109870900
 Complex B
    109870900
 Complex C
   U2 SnRNP specific factors
    109870900
Chromosome and associated proteins [BR:oki03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    109870900
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298
Other DBs
NCBI-GeneID: 109870900
NCBI-ProteinID: XP_020317180
Ensembl: ENSOKIG00005020547
LinkDB
Position
LG26:complement(37753715..37776668)
AA seq 1326 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAEQT
PGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGHTT
PGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRW
DETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERNRP
LTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQIND
QPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQ
ITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVI
EPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASA
LGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQ
QKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMD
AEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHF
WQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGN
LGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLW
RLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALK
AIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRI
CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI
VAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM
DRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLR
VAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYLRY
ELEYFL
NT seq 3981 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacatcgaggcccagatcctggagatccagggg
atgaaagctgccctggtggaggagggaggagatcagggtgtgggcctggactctactgga
tactacgaccaggagatctacggtggcagcgatagccgcttcgctggatatgtcacctcc
atcgcggccaatgaacaggaggatgatgatgaggaggactcgtcaacgagtctactggga
cagaagaaaccgggatatcacgctccggtggctatactcaatgcaataccacagtcagat
gaacagtacgacccgttcgctgaacaccggcccgctaagattgcagagcgtgaagacgag
tacaaggccagacgtcgacagatgatcatctctccggagcgtcttgacccctttgcagac
gggggcaaaacgccggaccctaagctgcagtccaggtcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagagaaggccaaaaca
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgctgctgccgccgcaaag
cgtaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaacccccagcaac
gccggcacaccgaagaagatgtccagctgggaccaggctgatcaggctgctgagcagacc
ccaggacacacccctggccacaccccctccaacagccgctgggacgagacccccggaagg
aacaagggcagtgagaccccaggggccacccccagctcccgaatgtgggaccccacccct
agccacaccccggctggagcagccacgccaggcagaggggacacaccgggacacaccacc
cctggacacgggggagccacaggcagcgtgcgcaaaaaccgatgggacgaaacccccaag
acggagagggagacccctggtcatggaagtggttgggccgagactccccgtacagacaga
ggagacgagtcagttggagagacccccacccccggggccagtaaaaggaaatcccgttgg
gatgagacccccgccagccagatgggctcttccaccccactgatgacccctgggaaaact
cctatcggaacccctgccatgaatatggccactccttctccaggtcacctgatgagcatg
accccagagcagctgcaggcctggcgttgggagagggagatagacgagaggaaccgacct
ctcacagacgatgagctggatgccatgttcccagaaggatacaaggtccttcccccacca
gcaggctatgtgcccatccgtaccccggcccggaagctgtctgccacccccacccccatg
gggggcatgacgggcttccatatgcagcaggaggaccgctccatgaagcagatcaacgac
cagcccagtgggaacctgcccttcctcaaaccagatgacattcagtactttgacaaactg
cttgttgaggtggatgagtccactctgagcccagaggaacagaaggaacgtaagatcatg
aaactactgctgaagatcaagaacggaacacctcccatgagaaaggctgccctgcgtcag
atcacagacaaggcgagggagtttggagcagggcccctgttcaaccagatcctgcccctg
ctcatgtctcctactctggaggaccaggagcgccacctgctggtcaaggtcatagaccgc
atcctctacaagctggatgacctggtccgcccatatgtacacaagatcctggtggtgatt
gagcccctgctgattgatgaagattactacgccagagtggagggcagagaaatcatctct
aatttggccaaggctgccggcctggccactatgatctccactatgagacctgatattgac
aacatggatgaatacgtcagaaatacaacagcaagagcttttgctgtcgtagcgtccgct
ctgggtatcccctccctcttgcccttcctcaaagctgtgtgtaagagcaagaagtcttgg
caggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatgggctgtgcc
atcctgccccatctgaggagtctggtggagatcatcgagcatggtctggtggatgagcag
cagaaggtgcggaccatcagtgccctggccatcgccgccctggcggaggctgccacgccc
tacggtatcgagtcctttgactccgtactcaaacccctgtggaagggtatccgacagcac
agaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctctaatggat
gctgagtacgctaactactacaccagagaggtcatgctgatcctcatcagagagttccag
tcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgttgtggtact
gacggtgtggaggccaactacatcaagacagagatcctgcctcccttcttcaagcacttc
tggcagcacaggatggccctggacagacgcaactacagacagctggtggacaccacagtg
gagctggccaataaggtgggagcagcagagatcatctctcgtattgtagatgacctgaag
gacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatggggaac
ctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcatcctgtat
gccttccaggaacagaccactgaggactctgtgatgctgaacgggtttggcacagtggtg
aatgccctggggaagagggtgaagccctacctgcctcagatctgtggtacagtgctgtgg
cgtctcaacaacaagtctgccaaggtccgccagcaggctgctgacctcatctctcgcacc
gccgtagtcatgaagacctgccaggaggagaagctgatgggtcacctgggagtggtgtta
tatgagtatctaggagaagagtatcctgaagtactgggaagtatccttggtgctctcaag
gccatcgtcaatgtcatcggtatgcacaagatgactccaccaatcaaagacctgctaccg
cggttgacgccaatcctgaagaacagacatgagaaggtgcaggagaactgtattgacctg
gtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggagtggatgcgcatc
tgctttgaactgctggagctcctcaaggcccacaagaaggccatccgcagagccaccgtc
aacaccttcggatacatcgccaaggctatcggaccccatgatgtgctggccacactactc
aacaacctgaaggttcaggagcgtcagaaccgagtgtgtaccaccgtagccatcgccatc
gtggctgagacctgttctcctttcaccgtgctccccgccctcatgaacgagtaccgtgtg
cctgagctcaacgtgcagaacggcgtgctcaagtccctatccttcctgtttgagtacatc
ggggagatgggcaaggactacatctatgctgtcacgcccctgctggaggacgcactgatg
gacagagacctggtccacagacagactgccagtgccgtggtgcagcacatgtccctgggc
gtctacggcttcggctgtgaggactcccttaaccacttgttgaactacgtgtggcccaac
gtgtttgagacgtcgccccatgtaatccaggctgtcatgggggccctggagggcctcagg
gtggctatcggcccctgccgcatgctgcagtattgcctgcagggtctcttccacccagcc
aggaaggtccgagacgtctactggaagatctataactcgatctacatcggttcccaggat
gctctgatcgctcactacccccacgtctacaacgatgagaagaacccttacctccgctat
gagctggagtacttcctgtga

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