KEGG   Oncorhynchus kisutch (coho salmon): 109871011
Entry
109871011         CDS       T09179                                 
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109871011
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109871011
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109871011
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oki04147]
    109871011
   00536 Glycosaminoglycan binding proteins [BR:oki00536]
    109871011
Exosome [BR:oki04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   109871011
Glycosaminoglycan binding proteins [BR:oki00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109871011
SSDB
Motif
Pfam: Collagen C4 FeoB_associated
Other DBs
NCBI-GeneID: 109871011
NCBI-ProteinID: XP_020317344
LinkDB
Position
LG26:23673664..23740733
AA seq 1644 aa
MMVHSGTLVLLVAVSYTIFRTEAKGCSGSSCGGKCDCSGVKGEKGERGFPGLQGNMGFPG
MQGNEGPAGPMGPKGEYGESGTPGMKGTRGSNGLSGFPGNPGLPGIPGQDGPPGSSGIPG
CNGTKGDRGTDGQPGFPGLQGPPGIPGLMGMKGDPGGVLGIIPLKGDKGFPGTPGLPGPN
GPSGPEGPPGNQGSDGPRGFPGIPGPPGEKGDRLSFQSEKGDKGAQGLRGPPGPPGLPSQ
EAGGNTITHFLPGPPGQRGETGDRGDKGSCIPHLNGVKGEQGPPGPRGKPGKDGDNGFKG
ERGFPGGPGYHGTPGEKGEKGPPAYVDSAPGSPGPPGLPGLQGERGFPGLQGDLGPPGSL
IEGPPGEKGQPGEIGQKGDRGADGDSLTGKPGQDGSVGPPGPPGPPGDEPCDPALEKGPP
GPPGPPGLQGELGQKGDQGDTCVQCEAFGPPGLPGPQGPKGLQGYPGAAGTKGDTGLPGP
TGPDGSPGNYGTPGLIGAPGAHGEPGDIYVASGLKGDKGGSGFVGTRGLPGVDGLPGKAG
LPGLPGPKGEPAQNGIKGDRGLDGEHGITGPPGERGPPGVPGLGRQGEPGEKGTSGQGGR
PGIPGQPGVKGEPGKGVSSPGPQGTPGPRGESGIRGLQGDRGPHGDPGIPGFPGQKGDTG
APGMGFSGPPGPKGYSGAPGATGLPGEPGRPGQDGFSGISGTPGPKGEPGRGLPGPKGAQ
GPAGVTGFPGEKGNLGLPGIPGQEGHTGPPGAQGIKGDHGPPGQHGGTGPPGPPGAGEPG
APGPMGPPGESGLFGHDGVKGDKGLPGSPGLDMPGPQGEKGDSGLPGLSGSKGFPGRPGP
AGRDGFPGGAGPKGEMGVMGTPGTPGYQGPSGNPGSPGLRGDPGISGPRGEFGENGPKGE
RGEPGLQGPAGNMTDVDMEHMKGEKGDLGDPGDPGYTGEKGYPGQPGVPGMPGKDGEPGT
PGQPGDKGETGFPGEPGSIGYPGNKGGIGEMGYPGSLGTKGDKGIVGTPGHPGFRGTEGV
KGDKGQTGLPGVGVPGPSGEKGQLGLPGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGHI
GYQGQPGQPGEKGIGGLPGSPGEPGQTGRPGEPGLQGPPGTTGEKGASGVDGIPGSSGER
GDTGLPGRGFSGTPGSSGDKGDKGSPGFPGSPGIPGIPGTRGDKGIPGFEGSHGQPGERG
LPGPAMEGPKGDQGVSGKPGEPGTSGAPGPAGVPGSVGGKGDKGDQGEPGVHGEQGFKGD
QGYPGLSGQAGLPGVDGLKGEMGLQGVPGFPGTKGEFGVVGFKGELGDRGFPGDKGNDGP
PGPPGPHIFIKGDSGFPGNQGPQGPVGPSGIPGLKGQQGVTGIQGIKGDEGNPGFNGLPG
AKGEPGLLGPSGPRGYPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQSVEVPHCPEGTS
VIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTS
PEPMPMNMAPITGQSIKPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRGAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKP
VPTTQKAGNLRSNISRCQVCMKRT
NT seq 4935 nt   +upstreamnt  +downstreamnt
atgatggtccatagtggtacgctggttctgttggtggctgtatcctacactatatttcgg
acagaggctaaggggtgttctgggtcatcgtgcggaggaaaatgtgactgcagtggagta
aaaggagaaaagggtgagcgggggtttcctggtctccaaggcaacatggggttcccgggc
atgcagggcaacgaggggcccgccgggccgatgggccctaagggagaatatggcgagtct
ggaactcctggaatgaaaggaacacgtggatctaatggtttgtcaggcttcccaggaaat
ccagggctaccgggtatccccggacaagacggcccccctggatcgtcaggtatcccaggg
tgcaacggaacaaagggagatcgagggacagatggacagcctgggttccctggtctacag
ggtcctcctggtatccctgggctaatgggaatgaaaggagacccaggtggtgttttagga
atcatcccactgaaaggagataaaggattccctggaacacctggtttaccgggacctaat
ggcccctcaggacccgaaggccccccaggaaaccagggatcagacggacccagaggtttc
cctggcatacctggccccccaggagaaaagggtgaccggctgtcattccagagtgagaag
ggagacaagggtgcacaagggctccgtggtccccctggcccccctggactcccgtcacag
gaagcgggaggaaataccattactcatttcctccctggaccaccgggtcagagaggcgag
acaggagacagaggagacaaaggttcttgcattccccatctaaacggggtcaagggtgaa
caaggcccaccaggaccaaggggaaaacctggcaaagatggcgacaatggatttaaggga
gagagaggcttccctggtggccctggataccatggaacaccgggtgaaaaaggagagaaa
ggacctccagcatatgttgatagtgctcctggctctcccggcccccctggtctcccgggc
ttacaaggagaaagaggtttccctggtcttcaaggagaccttggtccaccaggcagtctt
attgaaggacctcccggagagaagggccaaccaggagagattggtcagaagggagacagg
ggtgcagatggggactctctcacaggaaagcctggacaagatggatccgtcggaccccct
ggtcctcccggacctcctggtgatgagccatgtgatccagcccttgagaagggaccaccc
ggaccccccggcccaccaggactacagggggagttgggacagaaaggtgatcagggagac
acgtgtgtgcagtgtgaagccttcgggccccctggactccctggtccacaggggcctaaa
ggactgcaaggatatcctggagcagcaggcactaaaggagacacgggcctgcctggacct
actgggcctgatggaagccccggtaattacggtactcctgggttgatcggggctccagga
gcccatggtgagcctggcgatatctacgtggcttcagggctgaagggtgacaaaggaggg
tctggcttcgtgggcacacgaggactgccaggtgtggatggactgccagggaaagctgga
ctaccaggcctgcccggacccaaaggagaacctgcccaaaatggcatcaagggggaccgt
ggtctggatggggaacatgggatcactggacccccgggagagaggggtcctcctggtgta
ccaggtcttggccgacagggggagcctggagagaagggtacatctggccaaggaggccga
cctggaatccctggacaaccaggagtgaaaggtgaaccaggaaaaggtgtgagttcacct
ggaccccagggcacccctggacctcgaggagaatctggcatacgtggactacaaggtgac
cgaggacctcatggagacccaggaattccaggattcccaggacagaaaggtgacacaggt
gcacctggcatgggattctcaggaccacctggacctaaaggatattctggagctccagga
gccactgggttgccaggagagcctggaagacctggacaggatggtttctctggaatatca
ggcacacctggtccaaagggtgagccaggtaggggtctacctggacctaaaggtgctcag
ggtcctgccggagtgacaggtttccctggagagaaaggcaaccttggtctacctggtatt
cccggacaagagggacacacaggaccacctggagctcagggcatcaaaggtgaccacggc
ccccctggtcagcatggtggcacaggaccccctggaccccctggagcaggagaacctggt
gcccctggacccatgggaccccctggagagtcaggcctcttcggtcatgatggtgtgaag
ggtgataagggtttgcctggctctcctggtctggacatgcccggccctcagggagagaag
ggagactcaggattacctggactttctggttccaaagggtttccaggacgaccaggcccc
gccggcagagatggattccctgggggggcaggccccaagggagagatgggagtcatggga
acacctggaacaccaggatatcagggtccttctgggaaccctggaagtccaggactgaga
ggtgaccctggtatctctgggccaaggggggagttcggtgagaatggacccaaaggagag
aggggagagccaggtctccagggccctgccggcaacatgactgacgttgacatggagcac
atgaagggcgagaaaggagacctcggggatccaggtgaccctggatacacgggagagaag
ggttatccaggacagcctggagtacctggtatgccaggaaaggatggagagcccggtaca
cctggtcagccaggtgataaaggggagacaggttttcctggagagcccggcagtattgga
tatcctggaaataaaggaggcattggtgaaatgggatatccaggttctctaggtacgaag
ggtgataaaggcattgtgggtacaccgggtcatccagggttcaggggtacagagggggtg
aagggagacaagggacaaaccggtctgccaggtgttggagtaccaggaccctctggagag
aagggtcagttgggtctgcctgggttccctggtaacgcaggagagaagggtcagaaggga
ggaatgggagtgcccgggatgccaggaacaccaggaaccaagggagacactggacacatc
ggttaccaaggtcagccgggtcagccaggagagaagggtattggtgggcttcccgggtca
ccaggagagccaggtcaaacaggtcgaccaggtgagcctggtctgcagggtccaccaggt
acaactggagagaaaggagcgtcaggagtggacggcatacctggatcatcaggagagaga
ggagacacaggtttacccggcaggggcttctcagggacaccagggtcgtctggggataaa
ggtgacaaaggctctccaggtttcccaggctctccaggtatcccgggtatcccagggacc
aggggagacaagggtattccaggctttgagggttcccatggccagccaggagaacggggt
ctcccaggacccgccatggaggggcccaaaggagaccaaggagtgtcaggaaagcctgga
gaaccaggtaccagtggtgctccaggtcctgctggtgttccaggcagcgtgggggggaag
ggagacaaaggggaccagggtgaaccaggagtacatggggagcagggtttcaaaggagat
caaggataccctggactttctggtcaagctggccttccaggtgttgatggactgaaggga
gagatgggactgcagggagtgcctggtttcccagggacaaagggtgagttcggagtggtt
ggattcaaaggagagctgggggacagaggattcccaggagacaaaggtaatgatggtccc
cctggtcctcctggcccccacatcttcatcaagggagacagcggcttccctggtaatcag
ggccctcaggggcctgtggggccctcgggtatccctgggctgaaaggacagcaaggtgtg
acaggtattcagggtattaaaggtgatgaggggaacccagggtttaatggtctccccggc
gccaagggagaaccaggcttgcttggtccctcaggacccagagggtaccctggaccccca
ggacctgatggtgttccgggtcaggtgggtcctcctggcccctcctccatggaacatggt
ttcctggtaaccaggcacagccaatcggtggaggttccacattgtcctgagggaacgtca
gtgatctatgatggatattccctactctacgtccagggcaacgagcgctcccacggccag
gacctgggtacggctggtagctgtctaaggaagttcagtcccatgcccttcctcttctgt
aacatcaacaacgtctgtaactttgcctcccgtaacgactactcctattggctcacctcc
cctgagcccatgccaatgaacatggcccctatcactggccagagcatcaagcccttcatt
agcaggtgttcagtgtgtgaggctcctgccatggtgatagcagtgcacagtcagaacatc
atgatcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatg
cacactagtgcaggtgctgagggctctggacaggcactggcatctcctggctcctgtcta
gaggagttccgtggcgctccgttcatcgagtgtcacggccgtggaacctgcaactactac
gccaactcctacagcttctggctggccaccatcgaggacgaggagatgtttacgaaacct
gtgcccaccacacaaaaggcaggaaatctccggagtaacattagccgctgccaggtgtgc
atgaagaggacatag

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