Oncorhynchus kisutch (coho salmon): 109871081
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Entry
109871081 CDS
T09179
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X3
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109871081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oki04121
]
109871081
Enzymes [BR:
oki01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109871081
Ubiquitin system [BR:
oki04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
109871081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
PRY
zf-RING_2
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
109871081
NCBI-ProteinID:
XP_020317493
Ensembl:
ENSOKIG00005017222
LinkDB
All DBs
Position
LG26:complement(16775874..16837221)
Genome browser
AA seq
669 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPNEPVQSISAFQCPTCR
YVITLSQRGLEGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAALDSTAMTSPSERVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPMPDCHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYEKLKQALDSNLSNLIKRNNELE
TLMGKLIQTCQHVECNASRQENKLLEECDLLIDIIQQRRQMIATKIKEGKAIRLRKLAQQ
IASCKQIIERSSSLITQADHTLKETDHARFLQTAKSICERVSMATASSQILIPEINLNDT
FDTFALDFTREKKMLESLDYLTAPNPPIIRAELCTASNDTITVHWTSDDEFCVVSYELQY
AIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQCGTKYMFIVKAINQAGSRSSEPWK
LKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETLSKKSHTQDRFTSQGSYGITGNVYIDS
GRHYWEALIGGSTWFAVGVAYKSAPKHEWIGKNSASWVLSRCNNSWVVRHNSKEMPIEPS
PHLRRVGVLLDYDAGSLAFYDGAGSQHLYTFDIAFAQPVCPVFNVWNKCLTVLTGLPIPD
HLEGTDCRD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactggagtcggagctgacctgcccaatctgtctggagctcttcgaggaccca
ctgctcttgccctgcgctcacagcctgtgtttcaactgtgcccaccgcatcctagtctcc
cactgcacccccaacgagcctgtgcagtccatcagcgccttccagtgcccaacctgtcgc
tatgtcatcaccctcagccagaggggcctagaaggactgaagcgtaacgtcactctgcag
aacatcattgaccgctttcagaaggcttccgtgagcgggcccaactcccccagtgagact
cgccgcgagcgggccgccctagacagcacggccatgacctcccccagtgagagggtgcag
tgtcagttctgtgagcaggaccctccccaagacgccgtcaagacctgtgtcacctgtgag
gtgtcctactgcgacgaatgcctgaaggccacccaccccaataagaagcccttcactggc
caccgtctgatcgagcccatgccggactgccacctcaggggactcatgtgtctggagcac
gaggacgagaaggtgaacatgtactgtgtcacagatgaacagttgatctgtgccttgtgc
aaactggtcggtcggcatcgggaccaccaagtagcagcactcagcgaccgctacgagaaa
ctgaagcaagccttggactctaacctcagcaatctaatcaagaggaacaatgagttggaa
actctgatgggcaagttgattcagacttgccaacatgtggagtgcaacgcatcaagacaa
gagaacaagctccttgaagaatgtgacctcctgatcgacatcatacagcagagaaggcag
atgatagccaccaagataaaggagggcaaggctatacggctgcgaaagctagcccagcag
atcgccagctgcaagcagatcattgagagatcgtcgtccctcatcactcaggctgatcac
accctcaaggagacagaccatgcccgcttcctgcaaacagccaaaagcatctgtgaaaga
gtgtccatggcaacagcatcctctcagatcctgataccagagatcaacctcaatgacacc
tttgatacgtttgcgttggacttcacaagggaaaagaaaatgctggaaagcttggattac
ctcacagcaccaaatcccccaataatccgagcggaattatgtacggcatcgaacgacacc
atcactgttcactggacgtctgatgacgagttctgtgtcgtctcctatgagcttcagtat
gccatcttcaccggacaagccaatgttgtcagtttgtgtaactcggctgatagctggatg
attgtgcccaacatcaagcagaaccactacacggtgcatggactccagtgtggcaccaag
tacatgttcatcgtcaaggccatcaatcaggcagggagtcgcagcagtgagccttggaaa
ctcaagaccaacagtcaaccatttaagttggacccaaagtctgctcacaagaagctgaag
gtctcccatgacaacctgacagtggagcgagacgagacgttgtccaagaagagccacact
caggaccgcttcaccagccagggcagctacggcatcacagggaatgtgtacatcgacagc
ggacgccactactgggaagccttgataggagggagcacatggtttgctgtgggcgttgct
tacaagtcagcaccgaaacatgagtggatcggcaagaactctgcctcgtgggtactgtct
cgctgcaacaactcctgggtagtacgtcacaacagcaaggagatgcccatcgaaccgtcc
ccccacctgcgtcgtgtgggggtgttgctggactacgatgctgggtccctggccttctac
gatggcgccggctcacagcacctgtacacgttcgacatcgccttcgctcagccagtctgt
cccgtgttcaacgtgtggaacaagtgtctgactgtcctcacagggctgcccatcccagac
cacctagagggaacagactgccgggattaa
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