Oncorhynchus kisutch (coho salmon): 109871338
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Entry
109871338 CDS
T09179
Name
(RefSeq) cytoplasmic dynein 1 intermediate chain 2-like isoform X1
KO
K10415
dynein cytoplasmic 1 intermediate chain
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04145
Phagosome
oki04814
Motor proteins
oki05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
109871338
09142 Cell motility
04814 Motor proteins
109871338
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109871338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oki03036
]
109871338
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
oki04812
]
109871338
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Centromeric chromatin formation proteins
SAC (spindle assembly checkpoint) factors
Motor proteins
Dynein complex
109871338
Cytoskeleton proteins [BR:
oki04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Dyneins
109871338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WDR55
Beta-prop_EML
Dynein_IC2
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_RIG_2nd
EIF3I
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IP5PC_F
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
109871338
NCBI-ProteinID:
XP_031661434
Ensembl:
ENSOKIG00005048288
LinkDB
All DBs
Position
LG26:14012945..14034416
Genome browser
AA seq
634 aa
AA seq
DB search
MSDKSELKAELERKKQRLAQIREEKKRKEDERKKKEADLKKDAAPLDDSDLEKKRRETDA
LLQSMGITSADVPVVPPPMSPTSKSVGTPSEAGSQDSGDGAVGSRTLHWDSDPSTLQLHS
DSELGRGPLKLGMAKITHVDFPPKETVSYTKETQTPVTTQQKEEEDEEEEEEEEEITPPQ
PVLEIQMEKPDQKEEEEEAPPQELTEEEKLQILHSSEFITFFDHSTRIVERALSQHVDVF
FDYSGREMEEKEGEIQAGAKLFLNRQFVDERWSKHRVVTCLDWSPQYPELLVASYNNNEE
APHEPDGVALVWNMKYKKNTPEYVFHCQSAVMSAAFARFHPNLVVGGTYSGQIVLWDNRS
NKRTPVQRTPLSAAAHTHPVYCVNVVGTQNAHNLISISTDGKMCSWSLDMLSQPQDSLEL
VFKQSKAVAVTSMSFPLGDVNNFVVGSEDGSVYMACRHGSKAGISEMFEGHHGPITGIDC
HTATGPVDFSHLFVTSSFDWTVKLWSTKNNKPLYSFEDNSDYVYDVMWSPTHPALFACVD
GVGHLDLWNLNNDTEVPTASTTVEGNPALNRVRWAHSGKEIAVGDSDGQILVYDVGEQIA
VPRNDEWTRFVRTLAEINENRDDAEELAAQRLSA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaagagcgagctgaaagcggagcttgaacggaagaagcaacgcctggctcag
atcagggaggagaaaaaaaggaaggaagatgagcgcaaaaagaaagaggctgacctgaag
aaagatgccgccccactggatgactcggatttggagaaaaagagacgtgagacagatgcc
cttctgcagagcatgggcatcacatcagctgatgtccctgttgtccctcctcccatgtcg
ccgacctccaaatctgtgggcacaccaagcgaggcagggagccaagactcgggcgacgga
gccgtggggtccaggactctacactgggactctgacccgtctactcttcagcttcactct
gactccgagctggggcgtggacctctgaagctgggcatggccaagatcacccatgttgac
ttccctccaaaagagacggtgtcgtacaccaaggagacccagacgcctgtgacgacccag
cagaaagaagaggaagacgaggaggaggaggaggaggaggaggagatcactccaccacaa
ccagtgcttgagatccaaatggagaaaccagaccagaaagaggaggaggaggaagcacct
ccacaagagctgactgaggaggagaagctgcagatcctccactcctcagagttcataacc
ttctttgaccacagcacccgcatcgtggagagggccctgtcccaacacgtggacgtcttc
ttcgactacagtggccgggagatggaggagaaggaaggtgagatccaagctggggccaag
ctgtttctgaacagacagtttgtggacgagcgctggtctaagcatcgcgtggtcacctgt
ctggactggtcccctcagtatcctgagctgctggttgcctcatacaacaacaacgaggaa
gccccccacgagccggacggggtggccctggtctggaacatgaagtacaagaagaacacg
ccggaatacgtcttccactgccagtctgcagtgatgtcggccgcctttgccaggttccac
cctaacctggtggtggggggcacctactcggggcagatcgttctgtgggacaacaggagc
aacaagaggacccccgtgcagaggacccctctgtcagcagcagctcacacgcacccagtg
tactgtgtgaacgtggtgggcacccagaatgcccacaacctcattagcatctctaccgat
ggcaagatgtgttcctggagcctggacatgctgtctcaaccgcaggacagcctggagctg
gtgttcaagcagtcgaaggccgtcgctgtcacctccatgtctttccccctcggagatgtc
aacaactttgtggtggggagcgaggacgggtccgtctacatggcgtgtcgccatggaagt
aaagcagggatcagtgagatgtttgagggccaccacgggcctatcacagggatagactgt
cacacagcgaccgggcccgtcgacttctcccacctgtttgtcacctcctcctttgactgg
accgtcaagctgtggagcaccaagaacaacaagccactgtactcgttcgaggacaactcg
gattacgtctatgacgtcatgtggtcccccactcacccggctctgtttgcttgtgtggat
ggagtgggccatcttgatctgtggaacctcaacaacgacactgaggttcctacagccagt
accacagtggaggggaacccagccctgaaccgtgtgcgctgggcccactctggcaaagag
atagccgtgggagactctgatggacagatcctggtctatgatgttggagagcaaatcgct
gttccacgcaacgacgagtggacccgttttgtccgaaccctggcggagatcaacgagaac
cgggatgacgccgaggagcttgccgctcagcgcctctctgcttga
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