Oncorhynchus kisutch (coho salmon): 109871420
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Entry
109871420 CDS
T09179
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109871420
00535 Proteoglycans [BR:
oki00535
]
109871420
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109871420
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109871420
Proteoglycans [BR:
oki00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
109871420
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109871420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
3keto-disac_hyd
DUF1554
Motif
Other DBs
NCBI-GeneID:
109871420
NCBI-ProteinID:
XP_020317886
LinkDB
All DBs
Position
LG26:complement(5232766..5419642)
Genome browser
AA seq
1635 aa
AA seq
DB search
MWDSQEGTVLPTDLIGLAENVNVLAGKENEMLGIVKVDLAESVLDEHNRTAEWNATVFPI
DSQPIPSVNVSLETTPSDRSSNRVIDSSSSWNANNFNSTEYSDEYTVSGDFLTPFDSNHS
LLATSETPAPESPRCWPIDFHLPFCKSMGGDSFVLPNYFNHSSVKEVRAVLGSWAWLLRS
RCHHSLEWFFCLLLLPRCPRGLPPPLPCRSFCEVLQDSCWTVLDEGSLPMECHSLPDEDD
GYQCLSVSNQKDEIGVSLLQLIGDPPPDEITKIYGPDNSPGYVFGPDANTGQLARAHLPS
PFYRDFSLLFNLKPQSTKGGVIFSVTDASQKIMYVGVKLSPVKANKQNVIFYYTEPDSQV
SYVAATFPVHNLADQWNRFSISVLDDKVTFYINCDDQPQVVRFERSPDEMALEAGAGVFV
GQAGGADPDKFLGVIGELRVVGNPQAAERQCEEEGDDSDVASGDGGSGDVEGKLDGKKKG
SGTLKWDVEVQKYVWVEDDRPTVSTTPPSSRPIQQPPVTRQQPEVSPKKETVNVGDTGRF
TVESNPGDPGPQGPGGSRGEKGDRGEKGDRGPFGPKGDSGSESGTRGGARGEKGVPGEKG
MKGKAGFGYPGSKGDPGPAGPPGPPGSPGPAAEVVSRGDSSVIQTVAGPRGPAGNPGPEG
PAGADGEPGDPGEDGSQGLVGPPGFPGTPGDSGLKGEKGDRGEGQPGPSGPPGPPGLPAP
SSHDRPTFVDMEGSGFPDLEALRGLPGLPGPPGLPGAPGPAVVGTGLSSSFGPQGPPGQD
GAPGQPGLPGPPGTDGRPAVAGTRGEKGDPGELGLPGAVGAKGAQGLTGIPGQPGLGGLA
GLPGPMGPVGQPGPPGPPGPSYHAGFDDMEGSGVGVANGVPGARGPDGRQGTTGIPGLPG
KPGFPGAPGEMGNEGLQGRVGQPGLDGFPGPNGQKGDRGERGETGRDGNGQPGPPGPPGP
PGQIIYQTSSSYDGVVGGAGPQGETGLPGQAGFPGPIGSKGDKGDPGQPGYGVKGEKGEP
GLIIGPDGSPLYLRELSGEKGDRGPAGPVGPPGQYGPSGIKGEFGMPGRPGRPGVNGYKG
EKGEPSTGAGFGYPGVPGPPGPPGPPGPAVPVDRLNGYDTSRNYPATKGEKGDRGAQGLP
GTPGVASNLDIFTFKNDLKGERGDSGVKGEKGEPSGGYYDPRFRGQQGPPGPPGNSGLMG
PKGDSIMGLPGPQGPPGSPGIGYDGRPGIPGPPGPPGPPGSPSLPGAYRPNHSINIPGPP
GPAGPPGTPGHTSGVTVLRSYDTMIATARRQSEGTLIYIVDKTDLYIRVRNGFKQVLLGD
YSPFYRDLDNEVAAVQPPPVVNYPQSQDHSANNGAEHFSQGGTATHPIKPPPHKPVEIPR
PARPDNRNPDPRYPPQYDPRYPPQTDARYPPQTDGRYSHVQPENRYPNQPESRFPVTPQR
RPVPLPVPQPGGHLHTSGPGLHLIALNMPQVGNMRGIRGSDFLCFQQARAVGLKGTFRAF
LSSKLQDLYSIVRKSDRDSLPIINLKDQVLFNSWESMFSKTGGRMKENAPIYSFDGRDIL
RDSAWPEKMVWHGSSNEGHRQTDNYCETWRAGDREVTGLASSLQTGQLLQQLPSSCSSSY
IVLCIENSSLSHSKK
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atgtgggatagccaggagggaacagttttacccacagacctcatcggtttagcagagaat
gtcaatgtgcttgcagggaaagagaatgagatgctgggtattgtcaaggtggacctagca
gaaagtgttttggatgagcacaacagaacagctgagtggaatgctacggttttccccata
gacagtcagcccatcccaagtgttaatgtctctcttgagacaactcccagtgacagaagt
agcaacagagtaattgacagtagctctagttggaacgccaataattttaactcgacggag
tattctgatgaatacactgtctcaggtgattttctaaccccttttgacagcaaccactct
ctcttagctactagtgagacgccggccccggaatcgccacgttgctggccaatagatttc
catttgcctttctgcaaatccatgggtggcgacagctttgtgttgcccaactatttcaat
cacagcagtgtgaaggaggtccgggctgttttgggctcttgggcgtggctcttgaggtcg
cgctgccaccatagcctggagtggtttttctgcctgctgctgttgcccaggtgcccccgg
ggcctgccaccgcctttgccttgccgcagcttctgtgaggtcctgcaggacagctgctgg
acagtcctcgatgagggcagcctccctatggagtgccactctttgcctgatgaggacgat
gggtatcagtgcttgtcagttagtaaccagaaagatgagatcggtgtctccctcctgcaa
ctgatcggggaccctcccccagacgagatcaccaagatctatggtcccgacaacagcccc
ggctacgtcttcggtcccgacgccaacacgggccagttggcacgtgcccatcttcccagc
cccttctaccgggacttctccctcctcttcaacctgaagccccagtccaccaagggcgga
gtcatcttttcggtcacagacgcctcgcagaagatcatgtatgtgggcgtcaagctgtcg
ccggtcaaagcgaacaagcagaatgtaatcttctactacacggagcccgattcgcaggtg
tcgtacgtggcggccaccttccccgtgcacaacttggccgaccagtggaaccgcttctcc
atctccgtgctggacgacaaggtcaccttctacatcaactgcgacgaccaaccccaggtg
gtacgcttcgagaggtccccggatgagatggcgctggaggccggagccggggtgttcgtg
ggccaagccggaggggccgatcccgataagttcctgggggtgattggggagctgagggtt
gttggaaacccccaggctgctgaaagacagtgtgaggaggaaggggacgactcggatgtg
gcttcaggagatggcggaagcggcgatgtggaagggaaactggacgggaagaagaaaggc
tcgggtactttgaaatgggacgtggaggtacaaaaatatgtgtgggttgaggacgacaga
ccgacagtttcgactacccctccgtcgtcacgcccgattcagcagcccccagtgacccgg
caacaaccagaggtgtctcccaagaaagagactgtcaatgttggtgacactggccggttt
actgtggagtccaatcctggtgatccaggaccgcaaggcccaggtggatctagaggagag
aagggtgacagaggagagaaaggagacaggggtcctttcggtccaaagggagattctggg
tctgagtcgggcacacgaggaggggcacgtggagagaagggagtgcctggagaaaaggga
atgaagggaaaagcaggcttcggatacccagggtcgaagggcgaccccggccccgctggt
ccccccggaccaccaggctccccggggcccgcggctgaggtggtatcacgtggtgacagc
tccgtgattcagacggttgcgggtcccagaggaccagctggaaatccgggccctgagggg
cccgcaggagccgacggagagcctggtgatcctggtgaagatggttctcaaggccttgtt
ggaccgccaggcttccctggaaccccaggagactctgggctcaaaggagagaagggtgac
cgtggtgagggccagccgggccccagtggacctcccggacccccaggactcccagcgcca
tccagtcacgaccggcccacctttgtggacatggaaggctctgggttccctgacttggag
gcacttcggggactgcctggtttgcctggccctcctggactccccggggccccaggtcct
gccgttgttggtacagggctttctagctcgtttggcccccaaggtcccccaggacaagat
ggtgcccctggtcaaccggggttacccggcccacctggtactgatggtcgcccagcagtt
gcagggaccaggggagagaagggtgacccaggtgaactcggtcttccgggagcagtcggc
gcaaagggcgcacagggattgactggtatccctggtcagccaggactgggcggattggct
ggccttcctggaccaatgggaccagtgggacaacccgggccaccaggaccccccggacca
agctatcacgctggctttgatgacatggaaggctctggtgtgggagtggccaatggggtt
cctggagcccgagggccagacgggcgacagggtactactggcatccctggcctaccggga
aagcctggtttccctggtgctcctggcgagatgggaaatgaaggactacaaggaagagtt
ggccaaccagggttggacggtttccctggacctaatggacaaaagggggacagaggagag
agaggcgaaactggtcgcgatggaaatggacagcctggaccaccaggcccacccggccct
ccaggacaaataatctaccagacctccagcagctatgatggtgtcgttggaggagctggg
ccccagggtgaaactggtctacctggccaagctggattccctggtcctattggatcaaag
ggcgacaagggagacccaggacaacccggttatggagtcaagggcgagaagggtgagcct
ggcttaatcattgggcctgatgggagtcctttgtacctgcgagaattgtcgggtgagaag
ggagacagaggacctgccggacccgtcgggccacctggacagtatggaccttcagggata
aagggtgaatttggaatgcctggaagacctggtcgccctggtgtaaacggatacaagggt
gaaaaaggagagccatccacaggtgccggatttggctacccaggtgtcccaggcccaccc
ggacccccaggacctcccggaccagctgtgcctgtggaccgcctcaacggatatgacacc
tcaaggaattatccagcgacaaagggggagaaaggtgatcgcggagctcaaggtctccca
ggaacgccaggtgtggcctctaacttagacatattcacattcaagaatgacctgaaagga
gagcgtggggattctggcgtgaagggggagaagggagagccaagtggtggctattatgac
ccccgttttagaggacaacaaggcccaccaggaccccctggaaactcaggacttatgggt
ccaaagggagattcaatcatgggcctccctggtccccagggcccaccaggctccccaggg
atcggctacgacggtcgtccaggaatcccaggcccaccaggtcctcccgggcccccaggg
tccccctcactaccaggggcctatagacctaaccactccatcaatattcctggccccccc
ggacctgctggaccacctggaactcctggtcacacttcaggggtgacagttttgaggtca
tatgacaccatgattgctactgcaagacgccagtcagagggcaccctcatctacattgtc
gacaaaacagatctctacatccgagtccgcaatggattcaaacaagtcctgctcggtgac
tacagtcccttctacagagatctggacaacgaagtagcggctgtccagcccccccctgtc
gtcaactacccccagtcccaggatcactcggccaacaatggagctgaacacttctcccaa
ggcggtaccgccacccaccccatcaagccacctcctcacaagccggtggagatccccagg
cctgccagacccgacaaccgcaaccccgaccccagatatccccctcagtacgaccccaga
tatccccctcagactgacgctaggtacccccctcagacagatggccgctacagccatgtg
cagcctgagaacaggtatcccaaccagcccgaaagccgattcccagtcaccccccagaga
agacccgttccccttcctgttccccagcctggcggtcacttgcatacatcagggccagga
ctccatctgatcgccctgaacatgccccaagtgggcaacatgcggggtattcgtgggtca
gacttcctgtgtttccagcaggctcgtgctgtgggcctgaagggcaccttcagggctttc
ttgtcctccaagctccaggacctctacagcattgttcgcaagtccgacagagacagcctc
cccatcataaacctgaaggaccaagtgctgtttaatagctgggagtctatgttcagtaag
actgggggcaggatgaaggaaaatgcaccaatctactcctttgatggcagagatatcctt
agggacagtgcatggcctgaaaaaatggtctggcacggctctagcaacgagggtcaccgc
cagactgacaactactgcgagacatggagggccggagaccgcgaggtgacaggtctagcg
tcctcactgcagaccggccagctcctacaacagttgcccagcagttgctctagctcctac
atagtgctgtgtatcgagaacagctctctctcacactccaaaaaataa
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