Oncorhynchus kisutch (coho salmon): 109871542
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Entry
109871542 CDS
T09179
Name
(RefSeq) tiggy-winkle hedgehog protein-like
KO
K11988
sonic hedgehog
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
109871542
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
oki01002
]
109871542
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109871542
Peptidases and inhibitors [BR:
oki01002
]
Cysteine peptidases
Family C46: hedgehog family
109871542
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Morphogens
109871542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Intein_splicing
Hom_end_hint
Hint_2
Ribosomal_S6e
Vint
Motif
Other DBs
NCBI-GeneID:
109871542
NCBI-ProteinID:
XP_020318019
Ensembl:
ENSOKIG00005026036
UniProt:
A0A8C7HR17
LinkDB
All DBs
Position
LG27:20768577..20771869
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AA seq
415 aa
AA seq
DB search
MDMMLMSIRLALVGFICLSLVSAGFACGPGRGYGKRRHPKKLKPLAYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKNKYGMLSRLAVEAGFDWVNYES
KAHIHCSVKAENSVAAKSGGCFPGSASVLLEDGRSKLVKELEVGDKVLAADKEGHIVSSD
FLMFMDRDPVTSREFYVFETEKPNRKLRLTPAHLVFVTNNVTDGDMTAVFASNVKPGQQV
FVVDEALDHLKAVTVERIYVEEYEGSYAPVTSQGTIIVDHVLASCYAVIEDHKWAHWAFA
PVRLGHALMSWTGLVKEREEIPQRDGIDWYSDILYHIGTLLLDRNSFHPLGMSQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacatgatgctgatgtcgataagacttgcgcttgtgggcttcatctgcctgtcttta
gtatccgctggcttcgcctgtggtccaggtaggggatatggaaaaagaagacatccgaaa
aaactgaagcctttggcttacaagcagttcattcccaacgtggcagagaagacccttggg
gccagtggcaaatacgaagggaagatcacaaggaactctgaaagatttaaagacctgaca
ccaaactacaatcctgacattattttcaaagatgaggaaaacactaatgctgacagactt
atgacacagagatgtaaggacaaactgaactctttggctatttcagtcatgaatcagtgg
ccgggagtgaagctgcgcgtgacagaaggctgggacgaggatggacaccatttcgaggaa
tctttacactatgaaggaagggctgtggatatcaccacctctgacagagataaaaacaag
tatggaatgttatccaggctcgcagtggaggcgggattcgactgggtcaattatgaatcc
aaagcccatattcattgttctgtgaaagcagaaaattcagttgctgcaaaatcgggtggc
tgcttcccaggatccgcctcagttcttctcgaggatggtcggagcaagctggtaaaggaa
ctggaggtgggcgacaaagtgttagctgcagacaaagaaggacatattgtatctagcgat
ttccttatgttcatggaccgagatccagtaacaagtcgagaattttatgtttttgaaacg
gagaagcccaacagaaagttaagactgacgccggcacacctggtcttcgtcacaaataac
gttacggatggcgatatgactgcagtgtttgccagtaatgtaaaacctgggcaacaggtg
tttgtcgtggacgaggcactagaccacctaaaggcagtgaccgtggaaaggatttacgtg
gaagaatacgagggatcttatgcaccagtgacttcacaaggaaccatcatagttgaccat
gttttggcgagctgttacgcggtaatcgaggaccacaaatgggcgcactgggcctttgca
ccagtccggttgggtcacgcgttgatgtcttggacaggtctagtcaaagagcgcgaggaa
atccctcagagagatggaatagactggtactcagacattctataccacatagggacattg
ctgctggacagaaactcctttcatccccttggaatgtcacaaagttga
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