Oncorhynchus kisutch (coho salmon): 109871826
Help
Entry
109871826 CDS
T09179
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oki03036
]
109871826 (hfm1)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
109871826 (hfm1)
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Meiosis-specific proteins
Others
109871826 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_C
ResIII
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
109871826
NCBI-ProteinID:
XP_031662267
LinkDB
All DBs
Position
LG27:complement(32622385..32644989)
Genome browser
AA seq
1628 aa
AA seq
DB search
MLDSEECTLSLDNLFFERPVVHKVKPLCQEQSSWQLEPPPSLSQIPATQDIQKEAEDLSS
FSFSQRSKKFIPPLKRTVGSDGFIQKNTDVNQITSDGGKEPEGQGGCALWSQEDFMNKSQ
CSTMVSRGRTETPQESGHALEQKHFPLDFSQSPPVRRSLFKPLIGQVLNSGADLNTRHSQ
TRPREQQTFNQVSMATEPRLARQSAAGPSPLSGLGPAAARGPPPHTPDKGTKRANVLPMT
PQPLQIQGTSGPGILRPVSEIHAKFRSVFKEFPYFNYVQSKALDDVLYTGKNVVACAPTG
SGKTVLFELAIIRLLMETTEPWRNVKAVYMAPIKALCSQRFEDWKKKFEPLGLSCKELTG
DTEIDDFFEIQDAHIIMTTPEKWDSMTRKWRDNCLLQLVRLFLIDEVHVVKDTTRGATLE
VVVSRMKAVHDFRAAENPQEDVSMRFVAVSATIPNIKDIADWLCDNRGPATCLEMDESHR
PVKLRKVVLGFPCSSNQTEFKFDLSLNYKMANIIQTYSDQKPTLVFCSTRKGVQQSAAVL
AKDARFIMRIEHKQRLMKYANSLLDSKLRDLVTFGVGFHHAGVDVSDRKVIEEAFTMGDL
PVLFTTSTLAMGVNLPAHLVVIKSTMHYIGGACKEYSDADMLQMIGRAGRPQFDTSATAV
IMTKTHTKDKYMQFMNGAEIIESSLHTHLVEHLNAEIVLHTISDVNMALDWIRSTFLYIR
ALKNPKHYGFSTDLDRCGIEAKLQELCLKNLNSLASIGLVSMDEDVNIKATEAGRLMARY
CVAFDTMKQFSKVTGTETLPELIELMAKGREFTDVQLRVNEKRTLNTLNKDKNRITIRYP
MEGKIKNNEMKVNCLIQAQFGSIPIQEFGLTQDTGRIFRNGVRISRCLAEFLNQRSKTGF
SALLNSLILAKCFSAKLWENSPYVSKQLEKIGLTLSAAMVNAGLTTFSKIEKTNARELEL
IVNRHPPFGNQIREAIINLPKYEVCLEQLPRYNVATAEIVVTVNVKNHEQLLSKRTAPDH
HYVTMILGDCDNNVVFLQKLTDLMLLKSGSWSKKIEVAKASKGEEINVNLVSSEYVGLDI
QQKFSPFFSGPKRYGAESLAPEQHNTVQQAQANAQRSQGATQRTAQQTQKRNSTSTCATE
NDSSQSDPGKRHCNHLCKNKDQCGHDCCKNGGPGVLKRQMNQHSSFTSYLQDLKTRSDTL
TETPVKRLKMRMNGGMGAANMQQFSYSPKPILPASSRYESNQYGALARPQSVDSAEDFAT
PKEMPYVVTYGHEYNDYLEDISQTTGDLKPPPVQLQTLKESQSTSIWRKPNAYDGRSLSH
STPQITPQSQSRSYPQSHSTPQSQSRSYPQSHSTPQSQSRSYPQSHSTPQSQSRGYPQSH
STPQSRGYSQSISQNQSRCYPQSHCTPQSRSYPQSHSTAQTQSRGNSTPQNQSRSFSQSS
IVDLTDDSGFFSSSITPSVTFDLGDEWDDFDHDNLVHANEKPCTTVAKTKGVDLDCDRPK
GNSTPLPSISLLPKPRFTTSNSPLRSTSPVVSQIPVTTLPVRPHNSQATASWSHSDNKAT
RTFSEPPMKAPPSFPKQTDSSLPPLGQRFDFFSKTTTPKNDTVTGKRLQGEDYSKEVEAF
MGIFDGLF
NT seq
4887 nt
NT seq
+upstream
nt +downstream
nt
atgttggactcagaagagtgtactttgtccctggataacttgttctttgagaggccagtt
gtccacaaagtaaagccactttgtcaagagcagagttcttggcagttggaaccccctcca
tccctctcccagattccagccactcaggacatccaaaaagaggcagaggatctttcatca
ttcagtttctctcagaggtccaagaaattcattccccctttgaaaagaacagtcggcagt
gatggtttcatacaaaagaacacagatgttaatcaaattaccagtgatggaggaaaagaa
cctgagggccagggcgggtgtgctctctggtctcaggaagacttcatgaacaagtcccag
tgttccacaatggtcagcagaggtcgaactgaaactccacaggagtctggtcatgcgctg
gagcagaaacattttcctctggacttcagccaaagcccacctgtacggagaagtttgttc
aaacctctcattggtcaggtgctgaacagtggtgcagacttgaacacccgccacagccag
acaagacccagagagcagcaaaccttcaaccaggtttccatggcgacagagcctcgactg
gcaagacagtcagcagcaggccccagccccctcagcgggctgggtccggctgcagcccgg
ggacccccaccgcatacaccggacaagggcaccaagagggctaacgtcctccccatgaca
ccccagccccttcagatacaaggtacttctgggcctgggatactccgaccagtctctgaa
atccatgcaaaattcagatctgtcttcaaagagttcccttacttcaactacgtccaatcc
aaagccctggacgatgttctttacacaggaaagaacgttgtggcttgtgctcctactggt
tctggtaagacagtgctctttgagttggccatcatccgcctactgatggaaaccacagag
ccctggagaaacgtcaaagctgtttatatggcccccatcaaagctctatgcagccagcgc
tttgaggactggaagaagaaattcgagcctctgggcctgagctgcaaggagctgaccgga
gacacagagatcgacgacttctttgagattcaggacgcccatatcatcatgaccacacct
gaaaaatgggacagcatgaccaggaagtggagggataactgcctgctgcagttggtccgg
cttttccttattgacgaggtgcacgtggtgaaagacactacgcgtggagcgacactagag
gtggtggtgagcaggatgaaggcggtccatgacttccgtgcagcagagaacccccaggag
gacgtctccatgagatttgtggctgtctccgccaccatccccaatatcaaggatatagca
gactggctgtgtgacaacagaggccctgctacttgtctggagatggatgagagtcacaga
cctgtgaaactgaggaaggtagtgctgggtttcccctgcagcagcaaccagactgagttc
aagttcgacctgtcactcaactacaagatggccaacatcatccagacctactcggaccag
aaaccaacccttgttttttgctcaacaaggaaaggagtccagcagtcagccgctgttctg
gccaaggatgccaggttcatcatgaggattgagcacaaacaacggttgatgaagtatgca
aactctctcctggactcaaaactcagagacctggtgacgtttggggttggtttccaccac
gccggggtagacgtgtcagacaggaaggtgattgaagaggccttcaccatgggagacctg
cctgtactgtttacaaccagtactctggcgatgggggtgaacctgccagcccacctggtg
gtgatcaagtccaccatgcactacatcgggggagcctgcaaggagtacagcgacgccgac
atgctgcagatgattggccgagcaggccggccacagtttgatacgtcagcaaccgcagtg
atcatgaccaagactcacaccaaagacaagtacatgcagttcatgaatggggcagaaatt
attgagagcagtctgcacacccaccttgtggagcacctgaacgctgagatcgtcctccac
accatctcagacgtcaacatggccctggactggatccgctccaccttcctctacatcaga
gcactgaagaaccccaaacactacggtttttccaccgacttggaccgatgtgggatcgaa
gccaaattgcaagagctctgtctgaagaacctgaactccctggcctccattggtctggtc
tccatggatgaggatgtcaacatcaaagctacagaggcaggcaggttgatggccaggtac
tgtgtggcatttgacaccatgaagcagttcagcaaggtgactggtacggagaccttacct
gagctgatagaattgatggcgaagggcagagagttcactgacgtgcagctgagagtgaac
gagaagagaaccctgaatacgttgaacaaggacaagaacaggatcaccatcaggtatccc
atggagggaaagatcaaaaacaatgagatgaaggtgaactgcttgattcaggcccagttt
ggctccattccaattcaagagtttggactcacacaagacaccggtagaatcttccggaat
ggagtccgaatcagcagatgtttggcagagtttctaaaccagcgctccaagacaggcttc
tctgctctgctcaactccctgatactggccaagtgcttcagtgccaagctgtgggagaac
tctccttacgtctcaaagcagctggagaaaatagggttgactctttcagccgccatggtg
aacgctgggctcaccaccttcagtaagatagagaagaccaacgccagggaactggagctg
atcgtcaacagacatcctccattcggaaaccaaatcagagaggctatcatcaatctaccc
aagtatgaagtttgtttggagcagcttccaagatacaacgttgccaccgcagagattgtc
gtgactgtgaacgtaaagaaccacgaacagctgctttcaaagagaactgctcctgaccac
cactatgtcaccatgatcctcggggactgtgacaacaacgtggtcttcctgcaaaaactt
acagacttgatgctgttgaagtcgggaagctggtcaaagaagatcgaagtggcgaaagcc
tccaaaggagaggagatcaatgtgaatctggtcagctcagaatacgtggggttggacatt
caacagaagtttagtcccttcttctctggaccgaagaggtacggagctgaatcactcgca
cctgagcaacataacaccgtgcagcaagcacaggctaatgctcagagatcacagggtgca
acacagagaacagctcagcaaacacagaagagaaactccacatccacatgtgccacagaa
aatgattcctcacaatcagatccaggcaaaagacactgtaaccacttgtgcaaaaacaag
gatcaatgtggccacgactgctgtaaaaatggagggccgggggttctgaaaaggcagatg
aatcagcattcgagtttcacctcctacctccaagacctgaagaccaggagtgacacactg
acggagaccccagtcaaacgcctcaagatgagaatgaatggtgggatgggagctgcgaac
atgcaacagttctcttattcacctaagccaatcctacctgcttcttctaggtatgaaagt
aaccagtatggcgctttagcaagaccacagagtgtagattcagctgaggactttgcaaca
cccaaagagatgccttatgttgtgacctatggccatgagtataatgactacctggaagac
atatctcagacaacgggagatttgaaaccaccacctgttcaacttcagacccttaaggag
tcacaaagcacttcaatatggaggaagcccaatgcctacgatggaagatccctcagccac
agcaccccccaaatcaccccgcaaagccagagcaggagttaccctcagagtcacagcacc
ccccagagccagagcaggagttaccctcagagccacagcaccccccagagccagagcagg
agttaccctcagagccacagcaccccccagagccagagcaggggttaccctcagagtcac
agcacaccccaaagcaggggttactcccaaagtatctctcagaaccagagcagatgttac
ccacagagtcactgcaccccccaaagcaggagttaccctcagagccacagcaccgcccaa
acccagagcaggggtaacagtaccccccaaaaccagagcaggtctttttctcagagttcc
attgtagacttgaccgacgacagtggtttcttctcatcgtcaatcacccccagtgtgaca
tttgacctgggagacgagtgggacgattttgaccatgacaacttggtgcacgccaacgag
aagccatgcaccactgttgctaaaactaaaggggtggacctggactgtgataggccaaaa
ggaaactccacaccactaccatccatttccttactgcccaaaccccgcttcactacatcc
aattccccactcaggtcgacctccccagttgtttctcagataccagttactactctccca
gtcagaccacacaactcccaggctactgctagctggagccactctgacaacaaggccaca
aggacattcagtgaaccccccatgaaagcaccaccctccttcccaaaacagactgactct
agcttgccccccctgggacaacggtttgatttcttctcaaagacgactaccccaaaaaat
gacactgtgactggcaaaaggctccagggagaggattacagcaaggaagtggaggcattc
atggggatatttgatggactattttag
DBGET
integrated database retrieval system
