KEGG   Oncorhynchus kisutch (coho salmon): 109872188
Entry
109872188         CDS       T09179                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03018  RNA degradation
oki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109872188
  09123 Folding, sorting and degradation
   03018 RNA degradation
    109872188
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109872188
   03041 Spliceosome [BR:oki03041]
    109872188
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     109872188
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     109872188
Spliceosome [BR:oki03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    109872188
SSDB
Motif
Pfam: LSM GPAT_C
Other DBs
NCBI-GeneID: 109872188
NCBI-ProteinID: XP_020318919
Ensembl: ENSOKIG00005047106
LinkDB
Position
LG27:complement(6888047..6894276)
AA seq 111 aa
MADRNQDRNKEGEKKKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTI
EYLRDPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq 336 nt   +upstreamnt  +downstreamnt
atggcggacagaaaccaggacagaaacaaggaaggagagaagaagaagaaagagagtatc
tttgacctgtcaaagtacattgataaacaaatccgtgtgaagtttcagggaggacgagaa
gccagtggagtcctgaaggggtttgaccccctgttgaacctggtattggacagcaccatc
gagtacttgcgggatcctgacgaccagttcaagttgactgaggacacgcggcagctgggc
ctggtggtttgtagagggacgtccgtggtgctcatctgtcctcaggacggcatggaagcc
atccccaacccattcatccagcagcaggacggataa

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