Oncorhynchus kisutch (coho salmon): 109872188
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Entry
109872188 CDS
T09179
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109872188
09123 Folding, sorting and degradation
03018 RNA degradation
109872188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109872188
03041 Spliceosome [BR:
oki03041
]
109872188
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109872188
mRNA degradation factors
5'-3' decay
Lsm complex
109872188
Spliceosome [BR:
oki03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109872188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
GPAT_C
Motif
Other DBs
NCBI-GeneID:
109872188
NCBI-ProteinID:
XP_020318919
Ensembl:
ENSOKIG00005047106
LinkDB
All DBs
Position
LG27:complement(6888047..6894276)
Genome browser
AA seq
111 aa
AA seq
DB search
MADRNQDRNKEGEKKKKESIFDLSKYIDKQIRVKFQGGREASGVLKGFDPLLNLVLDSTI
EYLRDPDDQFKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq
336 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaaaccaggacagaaacaaggaaggagagaagaagaagaaagagagtatc
tttgacctgtcaaagtacattgataaacaaatccgtgtgaagtttcagggaggacgagaa
gccagtggagtcctgaaggggtttgaccccctgttgaacctggtattggacagcaccatc
gagtacttgcgggatcctgacgaccagttcaagttgactgaggacacgcggcagctgggc
ctggtggtttgtagagggacgtccgtggtgctcatctgtcctcaggacggcatggaagcc
atccccaacccattcatccagcagcaggacggataa
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