KEGG   Oncorhynchus kisutch (coho salmon): 109872306
Entry
109872306         CDS       T09179                                 
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109872306
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109872306
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109872306
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oki04147]
    109872306
   00536 Glycosaminoglycan binding proteins [BR:oki00536]
    109872306
Exosome [BR:oki04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   109872306
Glycosaminoglycan binding proteins [BR:oki00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109872306
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 109872306
NCBI-ProteinID: XP_031663011
LinkDB
Position
LG27:complement(35562597..35636094)
AA seq 1657 aa
MRTALLCFALGVMLRRTEAKDCACTGKSMCHCEGVKGNKGERGCAGETGPPGSVGHPGSE
GHLGPVGPKGDVGPRGPPGTDGDRGPEGKEGFSATPGLPGIPGLQGPMGQPGSPGCNGTE
GERGATGPAGPCDGDDGLRGLPGAPGPKGESQMLIGFGQSGRPGPRGRDGDQGVHGVTGP
TGQQGDVGPRGVVGLLGLPGIPGFKGQEGRSSSIPGSGGPKGHQGPPGFPGPKGIKLYAH
APSDLKGETGDLGEKGCKGSPGYAGQVNFKEKGDQGGIGTEGRPGKDGRQGPAGYEGRKG
TPGLAGPHGIPGPRGQKGVQGQDGDPGEVTMIGCDVIGPKGQPGFTGPPGPPGVTGPPGA
TGFQGPPGSSGPNNGGDPYNRGAKGHSGPKGDEGEPGPIIQGEPGSEGSQGTTGDLGPPG
PPGESDNLKGVIGPPGAKGAKGEQGYGGQYGSKGEKGEVCSLCTGKGSGEPGPPGSPGQP
GVPGFSAGPGPKGEPGFKGPSGSLGQQGLHGPSGVPGPPGPKGNSGSCNHQGIKGEKGAP
GPAGRSGLDGLYGAPGFRGRKGQQGPKGDPYDGPLGLKGDTGVPGPPGPQGYPGPDGSPG
PVGIGPLGPSGPKGNSGVPGLPGTPGYRGQKGEPCSSVADQGVPGLPGKAGLPGTRGPPG
PCGGAGNPGEKGDSGVFSTLGRRGPTGQKGDKGQPGRPSTSGSGDPGRPGVMGFPGAQGP
KGDAGFETLGPAGPKGFPGGVGAQGPPGDPGVLGRPGSPGPPGINGSSGPKGSKGVDGSQ
GPPGYTGSCCTEATTGPPGLSGRPGLPGINGEMGSCGDPGTPGFGSSGPAGDPGPPGASG
PVVQGLTGQMGGRGRDGLPGASGPRGDPGLEGRSGPGPDGPPGPEGPPGPKGSVGPDGEK
GHSGVPGSVGDDGRPGPCGPSSDTVIHGPPGDPGKHGLPGFHGAKGHPGYPGPKGIDGRD
GDPGNGQRGCPGDPGADGLCSGGPGPSGLRGNMGLMGLPGPHGTKGGLGSNGDAGLDGRP
GPRGPKGTKGESSCAKPGLPGSPGQKGEPALNNKHDSKGMKGSPGYAGPPGSQGPSGAKG
DPGHHGAQGPAGQPGTDGPPGPPGLPASHGAPGQPGLPGLPGPYGPKGNQGHDGIPGPVG
QKGETLIVRSTPGPRGKNGLPGPKGDVGFPGPTPPGPPGCPGDQGHRGNEGPQGSRGRPG
FGGVCVNGLKGDAGSHGNPGSPGQQGPRGQPGSGGYECKGDRGDLGAPGGRGLDGPTGDL
GPPGLPGPGSIPGPPGPIGSPGHSGTPGVPGEMGDPSFNPGPKGPNGSRGPPGPPGCPGL
DVPVRPEKGDPGPPGYTGNQGPPGHSGLPGQPGLTGPPGPEGQQGHSPPGLPGFPGCKGD
KGSPGLTGPLGYLGFPGQKGPLGQRGSSTAGLADSFLLARHSQTIRVPDCPQGTALIYSG
YSLLFINGNKRAHGQDLGSIGSCLPRFSTMPFLFCDTDNTCRYAARNDYSYWLSTEKPMP
RSMDLIRGDEISSYISRCSVCEGSSNAMAIHSQTAQLPDCPGDWESLWTGYSFVMQTGAG
AEGSGQPLGSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSFWLALLDPNHMFSKPVPQTV
KGPLLEKVISRCRVCRKPQSNDKSSQAQAITQNIWNI
NT seq 4974 nt   +upstreamnt  +downstreamnt
atgaggactgcgttgctttgttttgctttgggggtgatgctgcgaagaactgaggcgaag
gattgtgcgtgtactgggaagtccatgtgtcactgtgaaggagtcaaaggcaacaaggga
gaaaggggttgtgcaggagagacgggtccacctgggtcggttgggcatccaggctcagag
ggtcaccttggacctgtggggccaaagggagatgtgggccctcgtggacctccaggaaca
gatggcgatcggggacctgaaggcaaagaaggattttctgcgacaccaggtctaccgggc
atcccaggccttcaaggaccaatgggccaaccaggttccccaggatgcaatgggacagag
ggtgagagaggtgctactggtccagctggtccctgtgatggtgatgatggattaagaggt
ttacctggagcacctggaccaaagggtgaatcccaaatgttaattgggtttggacagtca
gggagacctggaccccgaggaagggacggtgaccagggtgtccacggggtaacaggaccg
acaggacaacaaggggacgttgggccccgtggtgtcgttggattgctaggtctacccggg
atcccagggtttaagggtcaagagggacgcagctccagtatccctggctctggtggtcca
aagggacaccaagggccccctggattcccgggacccaaagggatcaaactatatgcccac
gctccctccgatttgaagggggagacaggggatctgggtgaaaagggctgtaagggttca
cctggttatgctggccaggtcaactttaaggaaaaaggggaccaggggggcattggcact
gagggaagaccagggaaagatgggcgtcaagggcccgctggatacgaggggagaaagggg
actcccggtttagcaggacctcatggaatacctggaccacggggacagaagggtgtccag
ggtcaagacggagatcctggggaggtgaccatgattggctgtgacgtaattggccccaaa
ggacaaccaggatttactggcccaccggggccccccggggttactggtcccccaggtgcc
actggattccaggggcctcctgggtcttcaggtcctaacaacggaggagatccctataat
cggggagcgaagggccacagtgggcctaaaggggatgaaggagagccaggacccatcatt
cagggagagccaggcagtgaaggctcacaaggaacaactggagaccttggacccccggga
ccacctggagaatcagataatctgaagggggttatcggacctccgggggcaaagggagcc
aagggagaacaagggtacggtggtcaatatggatcaaaaggtgagaaaggggaggtctgt
agtttgtgtacgggaaaaggatctggagagccgggacccccaggttcccctggtcagcct
ggagtcccaggctttagtgcaggaccaggacccaaaggagagccaggattcaaaggaccc
tcgggatcacttggacaacagggtctccatggcccttcaggtgttccaggacccccaggg
ccaaaaggaaattcaggttcctgcaatcaccaggggataaagggagagaaaggagcccca
ggaccagctggcagatcagggctggacggcctatacggggcccctggctttcgtggacgc
aagggccaacaaggccctaagggtgatccatacgatgggccactgggtctgaagggagat
actggtgtcccaggccctcccgggccacagggatacccaggaccagacggttcaccaggt
ccagtaggcataggaccgcttggcccctcaggacctaaaggcaatagtggggtaccaggt
ctacctggtacacctggttaccgaggtcagaagggcgagccctgcagcagtgtggctgac
cagggagtcccaggcctaccgggaaaggcggggctgccgggcacacggggccccccaggt
ccttgtggtggtgctggtaacccgggggagaaaggggacagtggtgtattctccaccctg
ggaagacgaggacccactggacagaaaggtgacaaagggcagccgggacgcccaagtacc
tctggaagtggcgatcctggacgacccggcgtaatgggattccctggggctcaagggcca
aagggtgatgctgggtttgagaccctaggtccagccggccctaaaggtttcccaggtggt
gttggggcccagggccctcctggagatccaggagtactgggccgaccagggagtccggga
ccacccggcatcaatgggtcttcaggccccaaaggaagtaaaggtgtagatggttcccaa
ggacctcctggttacacaggttcttgctgtactgaagccacaaccggaccaccagggctg
tcaggcagacctggactcccaggtattaatggagagatgggttcgtgcggggaccctggc
accccggggtttggaagctcaggtccggctggtgaccctgggccccctggggcctccgga
cccgtagtgcaaggcctgactggacagatgggaggcagagggagagatgggttaccaggt
gcatcaggtcctagaggtgaccctgggctggaaggaagatctggaccgggccctgacggc
ccacctggacctgaaggaccacccggtcccaaagggtcggttggccctgatggggagaaa
ggtcacagtggtgtaccaggctctgtgggggacgatgggcgcccaggcccttgtggacca
tcatccgatacagtcatacatgggcccccaggggaccctgggaaacatggtctgcctggt
ttccatggtgctaaaggacaccctggatatcctggacccaaaggcattgatgggagggac
ggtgacccaggaaatgggcagagaggctgtccaggtgatcctggggctgatggactgtgc
tcaggaggaccaggcccatctggactcagaggaaatatggggctcatgggtctaccaggt
ccccatggaacaaagggagggctgggttccaatggagatgcaggactagacggtaggccc
ggtccacgcgggccaaaaggaactaaaggagagtccagttgtgcaaaaccaggcctccca
ggatcacctggacagaagggcgagccagccttgaataacaaacatgactccaaaggaatg
aaaggctctcctggttacgcaggtcctccaggctcccaaggaccttctggagccaaagga
gacccaggacaccatggagcccaaggtcctgctggccaaccaggtactgatggtccccca
ggccccccaggactccctgcgtcacatggagctccaggacaaccagggttacctggcctt
cctggtccctatggtcctaaaggtaaccagggtcacgatggcattcctggacctgttggt
cagaagggagagacactgattgtgagatcaactcctggcccacgtggaaagaatggactt
ccaggtccaaagggagatgtgggtttccctggccccactcctccggggcccccaggatgt
ccaggagatcagggccaccgaggcaacgaaggaccccagggttctcgcgggagaccaggg
ttcggtggtgtttgtgtcaacgggctgaaaggagatgctggttcccatggcaaccctgga
agccctggacagcagggtccacggggacagccagggtctggaggctatgaatgtaaaggg
gacaggggagacctgggcgctccagggggcagaggcttggacgggcctacgggggacctc
ggacctccagggctaccggggccaggatccatccctggacctccaggaccaatcggttcc
ccaggtcactctggaaccccaggagtccccggtgagatgggtgatcctagttttaacccc
gggccgaaaggaccaaatggatccagagggccgccaggaccaccaggttgtccagggctt
gatgtgccagtgagacccgaaaagggggatccgggcccacccggttacaccggtaaccag
ggacctccaggtcacagtgggctgccaggacaaccaggattaacaggccccccaggccct
gagggtcaacagggacacagccctccaggcctgcctggcttccccggatgcaagggagac
aaaggatcgccaggactgacagggccgttgggctacctggggtttccgggtcagaagggt
cctcttggccaacggggcagcagcacggcaggcctggctgacagtttcctgctggccaga
cacagccagaccatcagagtgcctgactgcccccaaggcaccgccctcatctactctgga
tactctctgctcttcatcaatggcaacaaaagggctcacggacaagacctgggctccatt
ggcagctgcctgcctcgtttctccaccatgcccttcctgttctgtgacacggacaacacc
tgtcgctacgccgcccgcaatgactactcctattggctgtccacggagaagcccatgcca
cgcagcatggacctgatcagaggagacgagataagcagctacatcagcaggtgttcagtg
tgtgagggcagctccaatgccatggccatccacagtcagaccgcccagctcccagactgt
cctggtgactgggaatccctgtggactggatactcctttgtcatgcaaacgggtgcgggt
gctgaggggtcgggccagcctctgggctccccaggctcgtgtctagaacacttccgccag
gtccccttcatcgagtgtcacggccggggaacctgtaactacttccctgactcctacagc
ttctggctggccttgctagaccccaaccacatgttcagtaagcctgtgccccagacggtg
aagggacctcttctagagaaggtcatcagtcgctgccgcgtatgcaggaaaccacaaagc
aatgacaaatccagccaggctcaagcgatcactcaaaatatttggaacatctaa

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