Oncorhynchus kisutch (coho salmon): 109872331
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Entry
109872331 CDS
T09179
Symbol
smg7
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109872331 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109872331 (smg7)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109872331 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
109872331 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
109872331
NCBI-ProteinID:
XP_020319119
Ensembl:
ENSOKIG00005033573
UniProt:
A0A8C7J983
LinkDB
All DBs
Position
LG27:24295800..24327632
Genome browser
AA seq
1181 aa
AA seq
DB search
MNLCAQYLRQAEALKADMTDFKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQTNTSAIVKPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALAKAVESRDEVK
TKWSVSDFIKAFIKFHGHVYLSKSLEKLNNLREKLEEQFQRLILQKAFSSQQLVHITIIN
MFELHHLRDFGNETDDQSFSSEEQIGWFQLLGLFMSFLGVMCSRALLNKNRGEEIMGECP
LPAIKVSLDWLKLRPTVFQDGAVDRRQYVWPWLVSILNSFQPKEEDVSCASLTPLPEEFE
LQGFLALRPALRTLDFTKGHQGVAVDKEGLPVRARHQRLISLGKWVADNQPGLIQYKVSD
GLLLFITDIEELAIEEPQEKDAPVLQESSNSEQTPNEGNMGLKSVLSMGKTQNSVLEIGE
RPVVTFKENIKPREQSREPSRNHHQKEAGKERRDFGKGNGVPGKGEQKRDGKRKSEVKKN
SHEKAADAGKQVKAQSDMRKTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRQGF
PPPAYVIPPPVAFSMNPGFTFSTGMSVPGPFLQSASHPQQPGAQQQVQVQTGKPSHIPYS
QQRPSVPGAMNQGAPQGQPQQQPSQTMQQVQLQVQALVQQQQSPTKPVQPVQLGKSPPHH
PGMQQYMQVDQAGQMWGQQHQTQPTMQKMQAMQMPVKQPYYMGSPQDPLKLFEQQQYAMQ
TVPQQNSMDKKMKYPDVKMQDFYWDPSYRMGDNRPMVGERMGKRLPPGAFHPDQDNTPRG
PPFEDKSSPLLPPDLLKSISDFEEEEELAFTKPHGFYQALAGPLSTAPGRNIFLPNQSRM
ESGSEVMGQSSSLMPLSGFPIQESSYQNNSIFSQAYGKNMAPNPKTEAPMLHQEPSLYSL
FEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGSIPFSNFGPIGTPDNRDR
RMVDRWKVEKTPVSGFGLDYLPSASSSSDHRTPENSWHQGNTPSSSWAAQELPMEDSSTV
LLDSLKSIWSSSMMQPGPSALEQLLMQQKQQRGRGTMNPPH
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctgcgcccaatatttacggcaggcagaggccctgaaggctgacatgacagat
tttaagcttggtgcagcagaggtctggacttcaaggcaagcgcttcaggacttgtaccag
aagatgctggtgactgatctggagtatgctttggacaagaaagtggagcaagatctctgg
aaccatgcttttaaaaatcaaataacaacactacagagtcaagccaagaaccgagccaac
cccaatagaagtgaggtgcaggccaatctgtccctatttctcgaagcagctagtggattc
tacacacaattactacaggagctgtgtaccgtgttcaacgtggacttgccttgccgtgtg
aagtcatctcagcttggaattatcagcaataaacagaccaacaccagcgccattgtaaaa
ccccaacccagctcttgctcttatatctgccagcattgtctcgtccacctcggagacatc
gcacgatatcgcaaccaaaccagccaagcggagtcctattacagacacgcagctcaactt
gtcccttcaaatggtcagccttacaatcagctggccatcctggcctcctctaaaggggac
cacctcacaacgatattctactactgcaggagcattgccgtcaagttccctttccctgca
gcctccaccaacctgcagaaagctctcgctaaagctgttgaaagccgcgatgaggtcaaa
acaaagtggagtgtgtcagatttcatcaaggccttcatcaagttccatggtcacgtttac
ctgagcaagagcctggagaagcttaacaacctgagagaaaagctggaagaacagtttcag
cggctgattctgcagaaagccttcagctcccagcagctggtccacatcacaattatcaac
atgtttgagctgcaccatctgagggacttcggcaatgaaacagatgaccagagcttcagc
tccgaggagcaaatcggctggttccaacttctcggtctcttcatgtcatttcttggtgtc
atgtgtagccgagcactgctgaacaagaaccgaggagaggagatcatgggagaatgtcca
ttgccagccatcaaggtgtccctggactggctcaaactacgacctaccgtttttcaggat
ggtgccgtggacagacgacagtatgtttggccttggctggtgtccattctgaacagtttc
caaccaaaggaagaggatgtttcctgtgcatcattgactccacttccagaggagtttgaa
ctgcaggggtttttggctctcaggccagcgctacggacccttgacttcactaaaggccac
cagggtgttgctgtggacaaggagggtctgccagtccgtgcccgtcatcagaggctcatc
agcctggggaaatgggtggcagacaaccagccagggctgattcagtacaaagtcagcgac
ggcctgctgctgttcatcaccgacattgaggaattggccatcgaggagccccaggagaag
gatgcccctgtgctccaggagtcctccaacagtgagcagacccccaacgagggcaacatg
ggcctgaagtcagtcctgtccatgggcaagacccagaacagtgtgttggagatcggcgag
aggcccgtggtgaccttcaaggagaacatcaagccccgggagcagagcagggagcccagc
cgcaatcaccaccagaaggaggcagggaaggaacggagggacttcggcaaaggcaacggg
gtgccgggaaaaggagagcagaagagggatggcaagaggaagagtgaggtgaagaagaac
agccatgagaaagctgcagacgcagggaaacaggtgaaagcccagtcggatatgaggaag
acgccagtgtctgaggccaggaagactccagtcactcagacccagactacctgctcctcc
cagttcatccccatccaccacccgggagccttccctccactgcccagccgacaaggtttc
ccccctccggcctatgtgatccctcctcctgtggcgttctccatgaatccgggctttacc
ttctctacgggcatgtctgtccccgggccgttcctgcagtcggcctcccaccctcagcag
cccggtgcccagcagcaggtgcaggttcagactgggaagccgtcgcacattccatacagc
cagcagaggccgtcagtgccaggggcgatgaaccaaggggccccccagggccagccccag
caacagccttctcagaccatgcagcaggtgcagctccaggtccaggctcttgtccaacag
cagcagtcacccaccaagcccgtgcagccagtacagctgggcaaaagcccacctcaccat
ccagggatgcagcagtacatgcaggtagatcaggctggacagatgtggggccagcagcac
cagacccagcccaccatgcagaagatgcaggccatgcagatgcctgtcaagcagccctac
tacatgggaagcccccaggaccccctcaagctctttgagcaacagcagtacgccatgcag
acggtgccccagcagaacagcatggacaagaagatgaagtacccggatgtgaaaatgcag
gatttttactgggacccttcctaccgcatgggggataacagaccgatggtgggggagagg
atgggcaagcggctgccccccggggccttccacccagaccaggacaacacacccagaggg
cctccttttgaggacaagagctcccctcttctgcctccagacctgttaaaaagtatatca
gattttgaggaggaggaagagctggcctttactaagcctcatggtttctaccaggccttg
gctggccctcttagtactgctccaggacgaaatatatttttgccaaatcagtcaagaatg
gaaagtggctctgaggtgatgggccagtcatcttctctcatgcccttatctgggttccca
attcaggagagttcctatcaaaacaacagcattttcagccaggcctatgggaagaacatg
gctcccaaccccaagaccgaagctcccatgcttcaccaggaaccttctctctactccctg
tttgaaggaactccatggtccccgtcccttcctgccagctcagaccactctacaccagca
agccagtccccccattcttccaacccaagcagtttaccttcttctccacccacgcacaac
catggctccatccccttctctaacttcggccccataggaacacccgacaaccgagacagg
aggatggtcgaccgctggaaggtggaaaagacgcctgtgagtgggtttggtctggactac
cttccctctgcgtcgtcgtcttcagaccaccgaacccctgagaacagctggcaccagggg
aacacccccagcagctcctgggccgcccaggagttgccaatggaagactcctccactgtg
ctcctggacagtctgaagtccatctggtctagctccatgatgcagccggggccttcggcc
ctggagcagctcctcatgcagcagaagcagcagaggggccggggcaccatgaaccctcca
cactga
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integrated database retrieval system
