Oncorhynchus kisutch (coho salmon): 109872617
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Entry
109872617 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109872617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109872617
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109872617
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109872617
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109872617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
109872617
NCBI-ProteinID:
XP_020319504
Ensembl:
ENSOKIG00005040188
LinkDB
All DBs
Position
LG28:1379875..1393104
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSTEEAANGKKSYWAELEISGKVKSLSTSLWTLTHLTALHIGD
NSLSRIPPDIAKLQNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
KLQTLGLKGNPLAQEILNLYQEHDGTRKLLNYLLDNLAGTKRVNSEQPPPRSWIVMAEPD
RARTAALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMNCNADIISLQEV
ETEQYYNYFLPELKDQGYEGFFSPKSRARTMSECDRKHVDGCAIFYRTEKFSLVQKHTVE
FNQLAMANSEGSEAMLNRVMTKDNIGVAALLEVRKEMMEQSVGKSLHGMEKQLLLVANAH
MHWDPAYSDVKVVQTVMFLSEVKNIVEKATRSLKLSSVSGETNAVPLVLCADLNSLPDSG
VVEYLSSGGVDSTHKDFKELRYIDSLTNFNCNGKNGTSNGRITHNFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSQPTLNVLGVLGPLDPHWLHENNISGCPHPHIPSDHFSLFAQLEL
LLSYPSSVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgccagacccaaggcggatgtacacaataatgtccact
gaggaggcagccaatgggaagaagtcatactgggctgagctcgaaattagtggtaaagtg
aagagtctgagcacctcattatggacgttgactcacctcactgctcttcacatcggtgat
aactccctctctcgtatcccgcccgatattgccaaacttcaaaacctggtgtacctggac
ctctcatccaacaagatcaggagcctgcctgccgagcttggcaacatggtgtctctcagg
gaacttcttttaaacaataaccagttgcgggttctaccttttgagcttggaaaactgttt
aagttacaaacactggggttaaaaggaaacccacttgcacaagaaatattgaacctctat
caggagcatgatggcacgaggaaactgctcaactaccttctggacaatctggcagggacc
aaacgagtcaactccgagcaacccccacccagatcatggattgtcatggccgagcctgac
cgggcacgaacagcagccttgttttctgtgatgtgctacaacgtgttgtgtgataagtat
gccacgcgccagctctacggctactgcccctcctgggcccttaactgggagtacaggaag
aagtccatcatgcaggagatcatgaattgcaacgctgacatcattagcctacaggaagtg
gaaacagagcagtactacaactacttcctaccggagctgaaggaccagggttacgagggc
tttttcagccccaagtcccgcgccaggaccatgtctgagtgtgatcgcaagcatgtggat
ggctgcgccatattttacagaaccgaaaagttcagcctggtgcagaaacacacggtggag
ttcaaccagctggctatggcaaactctgagggctcagaggccatgctcaacagagtcatg
accaaggacaacattggtgtggccgctcttctagaggtgcgcaaggagatgatggagcag
tctgtgggaaagtctctgcacggcatggagaaacagctcctcctggtggccaacgcccac
atgcactgggacccggcgtactccgacgtcaaggtggtccagaccgtcatgttcctgtct
gaggtgaaaaacatagtggagaaggccacgcgcagcctcaagctctcctcagtctccggg
gagacaaatgccgtcccactcgtcctgtgtgctgacctcaactcactccctgactctggt
gtggtggagtacctgagctcgggcggagtggacagcacccacaaggacttcaaggagctt
cgctacatcgacagcctgaccaacttcaactgcaacggcaagaatggcacatccaacggc
aggatcacccacaacttcaagctgaagagtgcctacgaaaacggcctgatgccttacacc
aactacaccttcgacttcaagggcatcattgactacatcttctactctcagcctacgctc
aatgtattgggagttctgggtcctctggatcctcactggctccatgagaacaatatcagc
ggctgtccccacccccacatcccctccgatcacttctccctgtttgcacaactggagctg
ctcctctcctacccgtcatcagtcaatggaatccacctgccagggcgcaggtag
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