Oncorhynchus kisutch (coho salmon): 109872623
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Entry
109872623 CDS
T09179
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109872623
03036 Chromosome and associated proteins [BR:
oki03036
]
109872623
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109872623
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
109872623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
HHH_9
S1_RRP5
HHH_3
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
109872623
NCBI-ProteinID:
XP_031663288
Ensembl:
ENSOKIG00005042501
LinkDB
All DBs
Position
LG28:2083416..2137655
Genome browser
AA seq
1757 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQAFMDDEEEEEELNTEDQDEHGNLRGLIDDDDDV
DEDEEAEAEEKKSGGASSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKK
KYDRVKLMDDDEDDEKDQIADEIFHGGDGEGELEEGETVDPPLHRHGERHDEEEEEEGEE
ESDIDDFIVDDDGQPITKKRGKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYDQGEEEE
EDQDEEGWDRPKKQTKRRVGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIP
VKPAEDNELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNLSRKGPSTIAKIKEALNF
MRNQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQSHQY
EQISADPDKPLADGIRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNTAKAA
SKKKTLRKIKEVNEDGEEEEVEVEVEEEQKGPDLKLASRRDMYSICQSAGLDGLAKKFGL
TPEQFGENLRDSYQRHETEQFPAEPVELAKDYVCSQFNSPEAVLEGTRYMVAMQISREPL
VRHVLRQTFQERAKININPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGEQFLKMCQAEE
EGLLTIDICIDLLGVKGFAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFL
YPQMAKELKNKLIAEAKDNIIKSCCRRLYNWLKVAPYRPDQQQAEEEDDDLMDESQGKGI
RVLGVAFADSRDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDERDKKLQDIENLKKF
LITKKPHVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELAMLYMNSTKS
QTDFRDYPPLLRQAVSVARKIQDPMVEYAQVCSTDEDILCLKLHPLQEHVVKEDLLNALY
CEFINRVNEVGVDVNRAISHPYTQSLVQFVCGLGQRKGSHLLKILKQNNTRLENRTQLVT
MCHMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDES
AEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRV
PYRAPNTEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCP
FCQQDNFPELSEVWNHFDSGSCPGQAIGVRSRMDNGVQGFIPTKFLSDKVVKHPEERVKV
GMTVHCRIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDTYYDFDAETEDTKAEEELKKK
QQRTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQ
HVDVREEGKENAFSLGHTLWIYTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGD
KKKMEELLIRCKKEKPAFIPYFVSACKDLPGKFILGYQPRGKPRVEFVTISPDGFRYRSQ
MFPTVNGLFRWFKDHFQEPVPGITPSSSSRTRTPASVNATPANINIADLTRAVNALPRNM
TSQMFSAIAAVTGQGQGQNANTTPAQWGSSQYGYTGGSSGGGGGGGNSSAYHVFATPQQP
ISTPMMTPSYSYTTPSQQTMGTPQYPSSTPLSSHGHTQSSQGQGHSSSNSHHGHSSNTPS
SSSTSSRGRTPQQPKSSGSTAVDWAKMAEQWLQDKEAERKKQKTPRMTPRPSPSPMIEST
PMSIAGDATPLLDEMDR
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgacagcgaggctgaggagtcagaggaggaatttgaggagaaagac
ctgaagcccaaaaagacccaggcgtttatggatgatgaggaagaggaggaagagttaaac
acagaggaccaggatgagcacgggaacctgagggggctcatcgatgatgatgatgatgtg
gatgaagatgaagaagcggaagcggaagaaaagaagagcggaggagcgagtagcggcagc
gactcagaggatgaagtcagacacaggcgcaaaaaacgcaactatgatgactacctggat
gatgatgacctggacctcattgaggagaacttgggggtcaaagtcaagaggaggaagaag
aagtatgaccgcgtgaagctgatggatgatgatgaagatgacgaaaaggaccagattgca
gacgagatcttccacggaggagacggagagggggagctggaggagggagagaccgtcgac
cctcccctccatcgccatggtgaacgccacgatgaagaggaggaagaggaaggagaggag
gagtcagatattgacgactttattgtggatgacgatggccaacccatcacaaagaagaga
ggcaagttctcaggatacacggacgcagccctccaggaggcccaggagatcttcggcggt
gactttgactttgcagagtttgatgctgacggagcatatgaccagggtgaggaagaggag
gaggaccaggacgaagagggctgggaccggcccaagaagcagacgaagaggagagtgggg
aggaagagcatcttcgagatctatgagcccagcgagctggagagtagtcacatgacagac
caggacaacgagatccgttccacagacatgccagagaggttccagctgcgctccatccca
gtgaagcctgctgaggataatgagttggaggaagaggcagagtggatctacagaaatgcc
ttctcaacccccaccatctccatgcaggagagtacagactacctggacagagggaccacc
acaaacctcagcaggaaaggccccagcaccatcgctaagatcaaggaggccctcaacttc
atgaggaaccagcactttgaggttccgttcatcgcattctacaggaaggagtatgtagaa
ccggagctcaacatcaacgacctgtggaaggtctggcaatgggacgagaagtggtgccag
ctgaagagcaggaagcagaacctgacacgactgttccggaggatgcagtcgcaccagtat
gaacagatctctgccgaccctgacaaacccctggctgatggcattagacccctagacacg
gctgatatggagagactgaaagacgtccagtccatagatgagctgagtgatgtgtacagc
cacttcctgctgtactacggcagagacatccccaagatgcaaaacacagccaaggccgcc
agtaagaagaagacgctgaggaagatcaaggaggttaacgaggacggtgaggaggaagag
gtggaggtggaggtggaggaagagcagaaggggccagacctgaagctggcatctcgtaga
gacatgtacagcatctgtcagagcgcagggctcgacggcctggctaagaagtttggtctg
actccagagcagtttggggagaatctgagagacagctaccagcgccacgagacagagcag
ttccctgctgagcctgtagagctggccaaagactacgtctgcagccagtttaacagtcct
gaggcggtgttggaggggactcgttatatggtggccatgcagatttccagggagcctctg
gtcagacacgtcctcagacagaccttccaggagagagccaagatcaatatcaatcccacc
aagaaaggaaagaaggatatggatgaggcccattttggctactccttcaagtacctgaaa
aacaagccagtgaaggagctgaacggagaacagtttttaaagatgtgccaggctgaggag
gagggacttctcaccattgacatctgcatcgacctcctaggggtcaaagggtttgcaggt
gaccagacgtactttgatgagatcaagcaattctattacagagatgagttcagccaccag
gtgcaggagtggaacagacagaggacactggccatcgaacgctccctcacacagttcctc
taccctcagatggccaaggaactcaagaacaaactcatcgcagaggccaaggacaacatc
atcaagtcgtgttgcaggaggctgtataactggctgaaggtagctccctacagaccagac
cagcagcaggcggaggaggaggatgatgatctgatggatgagagtcaaggaaaaggcatc
agagtcctgggagtggcctttgcagacagcagagacacgccagtgttctgttctctgatc
aacggagagggagaggtggtggacttcctccgtctgccttacttcctgaagaggaggaat
gcatggagggaggacgagagggacaaaaagctccaggacattgagaacctaaagaagttc
ctgatcactaagaaacctcacgtggtggctgttgccggggagaatagagatgcccacatg
ataatggaggacattaagaggacagtgagtgagttggagcaggagtcttctctgcctgct
gtgggagtggagctggtggacaacgaactggccatgctttacatgaatagcacgaagtct
cagactgacttcagggactaccctccgctgctgcgccaggccgtgtccgtagccaggaag
attcaggatcccatggtggagtacgcgcaggtctgcagcacagacgaagacatcctctgc
ctcaaactacaccctcttcaggagcatgtagtaaaggaggacctgctgaatgctctgtac
tgtgagtttataaaccgggtcaacgaggtgggggtggatgtgaacagggccatatctcac
ccctacacacagagcctggtccagttcgtctgtggcctcggacaaaggaagggatcgcac
ctgctcaagatcctaaaacagaacaacactcgtttggagaacaggactcagctggtcacc
atgtgtcacatgggccccaaggtcttcatcaactgtgccggcttcatcaagatagacacc
gcctcgctcggagacagtacggactcatacatcgaggttctggacgggtccagggtgcac
ccggagacgtatgagtgggccagaaagatggcggtggacgctctggaatacgacgagtct
gcggaggacgccaacccggccggtgcgctagaggaaatcctggaaaacccggagcgactc
aaagacctggatcttgatgccttcgctgaggagctggagagacagggttacggtaacaag
ggcataacgctgtatgatatccgtgctgagttgagctgcaggtataaggacctgagagtt
ccctacagagctcctaacaccgaggaggtgtttaacctgctcaccaaggagacacctgag
accttctatataggtaagctgatcaccagtgtcgtgacaggcattgctcaccggcgccca
caaggggagagttatgaccaagccatcaggaacgactctaccgggctgtggcagtgcccc
ttctgtcaacaggacaacttccctgaactcagcgaggtgtggaaccattttgacagtgga
tcatgtccgggccaggccatcggtgtgaggtctcgaatggacaacggtgtccagggcttc
attccaaccaagttcctcagtgacaaggtggtcaagcaccctgaggagagggtcaaggtg
ggtatgaccgtacactgtcgcatcatgaagattgacattgagaagttcaacgtggacctg
acgtgtcgtacgtctgacctgatggataagaacaacgagtggaagcttcctaaggacacc
tactacgactttgacgcagagacagaagacactaaggcagaggaggaactcaagaagaaa
cagcagagaaccacctatataaagcgtgtgatcgcccatccatcgtttcacaacatcaac
ttcaagcaggccgagaagatgatggagtccatggaccagggagacgttgtaatcaggccc
agcagcaagggagagaaccacctcactgtcacatggaaggtggctgatggtatctaccag
catgtggatgtgagagaggagggcaaggagaatgccttcagtctgggacacacactctgg
atctacacagaggagtttgaggatcttgatgagatcacagctcgttatattcagccaatg
gcagcgtttgctcgcgacctcctgggacacaagtacttccaggactgtaacggaggggac
aagaagaaaatggaggagttgttgattaggtgtaaaaaggaaaagcctgcgttcatcccc
tattttgtctcagcctgtaaagacctgccagggaagttcatactggggtaccaacctcgc
ggaaaaccacgtgttgagtttgtgaccatcagtcctgacgggttccgctaccgctcccag
atgttccccacagttaacggactgttccgctggttcaaagaccacttccaggaaccagta
ccaggcatcacccccagcagtagtagtcgaacacggacacctgcttctgtcaacgctaca
ccagctaacatcaacatcgcagacctgacgcgagctgtcaacgctctcccgcggaacatg
acctctcagatgttcagtgccatcgccgcggtgacagggcagggccagggccagaatgcc
aacaccacacccgcccagtggggctccagccaatacggttacaccgggggcagcagtggg
ggtgggggtgggggaggcaactcctcagcctatcacgtatttgcaacgccccagcagccg
atatcgacgcccatgatgacccccagctactcatacaccacccccagccagcaaaccatg
ggtacgccccagtacccctcctccacccccttgtcctcccacggacacacacagagcagc
caagggcagggccacagcagcagcaacagtcaccatggacactcgtccaacacaccttcc
tcctcctccacctcttccagaggacgcacgccgcagcagcctaagtcgagcggcagcacg
gcggtggactgggccaagatggcggagcagtggctccaggacaaggaggcggagaggaag
aagcagaagacccccaggatgaccccacggccttcccccagccccatgatcgagagcacc
ccaatgtccatcgctggagacgcaacaccccttctggacgagatggaccgatag
DBGET
integrated database retrieval system
