Oncorhynchus kisutch (coho salmon): 109872629
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Entry
109872629 CDS
T09179
Symbol
gemin5
Name
(RefSeq) gem-associated protein 5 isoform X2
KO
K13133
gem associated protein 5
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109872629 (gemin5)
03041 Spliceosome [BR:
oki03041
]
109872629 (gemin5)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109872629 (gemin5)
mRNA cycle factors
P-body specific factors
109872629 (gemin5)
Spliceosome [BR:
oki03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
109872629 (gemin5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GEMI5_RBS
TPR_GEMI5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_IFT122_1st
Beta-prop_WDR5
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
DSE1_N
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_RIG_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_Aladin
WDR90_beta-prop_4th
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_NOL10_N
Beta-prop_EIPR1
PAC11
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_ACSF4
Beta-prop_Nup120_160
Beta-prop_VPS8
Tricorn_2nd
ASA1
Beta-prop_NUP159_NUP214
DNAI3_WD
TPR_IF140-IFT172
Motif
Other DBs
NCBI-GeneID:
109872629
NCBI-ProteinID:
XP_020319519
Ensembl:
ENSOKIG00005040714
LinkDB
All DBs
Position
LG28:complement(23553303..23574204)
Genome browser
AA seq
1491 aa
AA seq
DB search
MSITPFTMHERLLPASPNWYSSRCSDTNDKGILAFGAKNTIYLVDVTASSSTVVGELVGH
RERVSGFSFCQHPGQSHNCASTSDDGTVKFWDTNEKVLVKEHKTHQNTITALHWSPGEKN
LVVSGDEKGIVVCYQYNTGESQSFFPEPRNIFCLSCSPHNWHYVAVGYKDGMIVLIDVSK
KGEVVHRLRGHDDEIHALAWAPLPNEEVLYSRVDDNTETTNGMTEGKEKGCYLASGSKDQ
TIRIWSTLKGKGVMTMKLPFLKRRGTGVDPAVKERLWLTVHWPKGKPTQVVSSCFGGELI
LWDLTKGGKQKWSLLGASSEGQNHSRIVFNMSSVCVQDNRELLLSTSMDREIKCWDLSSL
DCCWTLPTLGGFVYTLAFSPVGTGCLALGVGDGMIRVWSTLSIQNKYDTKTFWQGIKSKV
TALSWHPTKEGSLAFGTDDGKVGIYDAFSNKPPQVSSTYHKKTVYTLAWGPPVPPLSFGG
TGDRLSYSLYSCAGEGIILQHDPWKLAGEATDIDRVIKDTNSIKHKLSPHTDLSWKPDGK
VVAIGNEDGSVEVYQAPTLKLLCTIQQHHKIINVLRWHHDHSSLPELQYLLASGSSNALV
YVHDLRTVIETPPEIPVVMTEAYRSLAGHTAKITGLAWSPHHDGRLVTVCYDGTAQVWDV
QKEEGLCNYRGHRGRLLCVQWSPVDPDLVWTGADDFTVQEWAVSKQEFTKPPKTKKTFDQ
VKAKLKAKKKKKATGKGGARAEESLSLIGDGNKGGASPAPGERPSDNEEEEEESETTSIS
SVTVSSSSNQMERPVMEKVQNGGKSLLTVKKEIKKVEKTEVTLKKRKPRSMLPLSTSMDH
RPREDLQQDCLNLATVRHSEASPAHCVPGLGDHIQLGLFADRDALYRMFQEEEEGHVEAG
HYESAVYLRLWKGDIAGALQVATEKGELSDHLLSVAPMAGYQVWLKTVEVYVKQLCLQEQ
FLKAASHLLSINKVYEAIDLLKSHQLYREAIALAKARLQPDDPVLKKLYTTWAAVLEKDG
HLSTAAKCYLAVDSSFDAAKVIAKKNDPVSLKTAASLARIAGESDLSYSLSLRCAKDLAS
SQDWLGAQQLLSTHESLLAHRLHYCTIELLTVSLTGTDIVTWTCSSIHPWSAPCKNQDGF
LATLRAVWERGFAVSPSNPEILKALHQQLKAIENPQTTPNVPMKQLLIQLSLDLTLGAVS
WLLGDWGAALEKLLQGVARGNEAGHFLLMSETCRLLFPQGIDSISEHKKMVDPSDEKALA
AARSLEAFVCYQDLYHMWWSLSTNTAGAQRDMTNGLHSASENHINGLDGHITDTPNGDGM
GWCVSAQNGDVKMGVCVNACQVLLSEPHATCQATQRAIAKIQQRLASMVHQHSQTQETKA
SHGEGQTEKPTSAQGSTPTDSQESTDAGQGADTESLPCLIAMVSEHHKELADIPEHVKKY
PYPDVLECCLVLLYLSKSSDLVPDHLKNEAVALIRKYGTSSLRKAAQRFLS
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattactcctttcacaatgcacgagagacttcttccagcctctccaaactggtac
tcttcgcgatgcagtgacacgaatgacaagggtatattggcgtttggagctaaaaacacc
atatatttggttgacgttacagcatcatcctctacagttgttggtgaactggttggccac
agagagagagtgtctggcttctcattctgccagcatcccggccaaagccataattgtgcc
agtacttctgatgatgggactgttaaattctgggacacaaatgagaaggtcctggtaaag
gagcataaaactcaccagaacaccatcacagccctccactggtcccctggggaaaagaac
cttgtggtgtcaggggatgagaagggcattgtggtctgctaccagtacaacactggtgaa
tctcaaagcttcttccccgaaccaaggaatatcttctgcctgtcctgctcccctcacaac
tggcactatgttgctgtggggtacaaagatggcatgattgtgctgattgacgtcagtaag
aaaggtgaggtggtgcatcgtctccgtggccatgacgacgagatccacgccctggcctgg
gctccactacccaatgaggaggtgctttacagcagagtagacgacaacacagaaacgacc
aatgggatgaccgagggcaaagaaaagggatgttatcttgcatctgggagcaaggaccaa
accataagaatctggagcacgctgaagggcaaaggtgtgatgaccatgaagctaccgttc
ctgaagagacgagggacaggggtggatcctgcggtcaaggagagactctggctcactgtg
cactggcccaaggggaagccaacgcaagtcgtgtcaagctgctttgggggtgagctgatc
ttgtgggacctcaccaagggaggcaagcagaagtggagcctgttaggagcatcctcagag
ggccagaaccacagcaggattgtgttcaacatgagctcagtgtgtgttcaggacaacaga
gagctcctgctcagcacctcaatggacagagagataaaatgctgggatctgtcgtcgttg
gactgctgctggacccttcccaccctgggggggtttgtgtacaccctggccttctctcct
gtgggtacgggctgcttggccctgggggtgggagacggcatgatccgcgtttggagcacc
ctctcaatccagaacaagtacgacaccaagaccttctggcagggcatcaagtccaaagtc
acagcgttgtcctggcatccaacaaaagaaggatccttagcttttggaaccgatgacggc
aaagttggcatttacgatgctttctctaacaaaccgcctcaggtatccagcacttatcac
aaaaagactgtgtacacattagcctggggacccccagtccctcctctgtcatttggtgga
acaggagaccgtctgtcctacagcctgtatagctgtgctggagagggcatcatcctacag
catgacccctggaaactggcgggagaggccacagacattgacagggtcatcaaggacacc
aacagcatcaagcacaagctgtcaccccacacagatctcagctggaaaccagatggtaaa
gttgtggccatcggcaatgaggacgggtctgtagaggtataccaggctccgactctcaag
ctgctgtgtaccatccagcagcaccataagatcatcaacgtgctgcgctggcaccatgac
cacagttccctgcccgagctgcagtacctcctggcctctgggtccagcaacgccttggtc
tatgtccacgacctccgcactgtcatagagactcctccagagattcccgttgtgatgacc
gaggcgtatcggagcctggcgggtcacacagccaagatcactggcctggcctggagcccc
caccacgacgggagactggtcaccgtctgttacgacggtacagcacaggtgtgggacgtg
cagaaggaggaggggctgtgcaactacaggggtcacaggggccggctgctgtgtgtccag
tggtctcctgtggacccggacctggtctggacgggagcagatgacttcactgtgcaggag
tgggctgtgtccaagcaggaattcaccaagccccccaaaacgaaaaagacatttgaccaa
gttaaggccaagttaaaggccaagaagaagaagaaggcaactgggaaaggaggagcaagg
gcggaggagagcttgtctctaattggagatgggaataaaggaggggcgtccccggcacca
ggagaaagaccatctgacaacgaggaggaggaggaggagagcgagaccactagcatctcc
tcagtgacagtctcttcatccagtaatcagatggaaagacctgtgatggagaaagtacaa
aatggagggaaatccttactcactgtaaagaaagaaataaaaaaagtggagaaaacagag
gtgactctgaagaagaggaaacctcgctccatgctgcccctcagtacctccatggaccac
cgccccagagaagacctccagcaggactgtctcaacctggcaacagtcaggcactctgag
gcctctccagcccactgtgtcccaggcctgggagatcacatccaactgggtctgttcgca
gacagagatgccctctataggatgttccaagaggaggaggagggccatgtggaggcaggt
cactatgagtctgcggtgtacctgagactatggaaaggtgacatcgctggagctctgcag
gtggccactgagaaaggagagctgagtgatcacctgctctcagttgcacctatggctggt
taccaggtgtggctgaagactgtggaggtctatgtgaagcagctgtgtcttcaggagcag
ttcctcaaggctgcctcccatcttctctccatcaacaaggtctacgaggccatcgacctc
ctcaagtcccaccagctctacagggaggccatagccctggccaaggctaggcttcagcca
gatgaccctgtgctcaagaagctctacaccacatgggcagctgtgctggagaaagacggc
cacttgtctactgctgctaaatgttatctcgccgtggactccagcttcgacgcagccaaa
gtcatcgccaagaaaaacgaccctgtctcactgaagacggccgctagtctggcgaggatc
gctggcgaaagcgacctgtcctattcactctccctgagatgtgcaaaagacctggcgtcc
tctcaggattggctgggagcacagcaactcctcagcacacatgagagcctattggcccac
cggttacattactgcactattgagctgctcactgtgagtctaacagggaccgacatagtg
acttggacctgttcctccatccatccctggtctgctccctgtaagaatcaagatggcttc
ctggctaccctgagggctgtgtgggagagagggtttgctgtctcccccagcaacccagag
atactcaaagctcttcaccaacaactgaaggctatagagaatcctcagacaacacctaac
gttcctatgaaacagcttctgatccagctgtcccttgacctgaccctgggtgcagtgagc
tggttgctaggtgactggggggcggccctagagaagctgttgcagggcgtggccagaggg
aatgaggcgggtcacttcttgctgatgtcagagacctgtaggctgctgtttcctcaaggt
atcgactccatctcagaacacaaaaagatggtggacccctcggatgagaaggccttggct
gcagctcggagcctggaggcgtttgtgtgttaccaggacctctaccacatgtggtggagc
ctcagcactaacacagcaggagctcagagagacatgactaatggactgcactcagccagc
gagaaccacatcaatggattagacggccacattactgacactccaaatggagatgggatg
ggatggtgtgtgagtgctcagaatggagacgtgaagatgggagtgtgtgtgaacgcttgc
caggtgctgctgtctgagccccacgcaacctgccaggccacacagagggctatagcaaag
atccagcagagactggcctccatggtgcaccagcacagccaaacccaggagactaaagcc
agccatggggagggacagactgaaaagcccacctcggcccagggctccactccaacagac
agccaagagtccactgatgcaggacaaggagctgacactgaatctctaccctgcttgatt
gccatggtttctgagcaccacaaagagttggctgacatcccagaacatgtcaaaaaatat
ccatacccagatgttctggagtgctgcttagttctgctctatttgagtaagagttccgat
cttgttcctgatcacctaaagaatgaagcagtggccttgatccgcaagtatggaacttcc
tctctccgcaaagccgcccagcgattcctatcttaa
DBGET
integrated database retrieval system
