Oncorhynchus kisutch (coho salmon): 109872638
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Entry
109872638 CDS
T09179
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X2
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04270
Vascular smooth muscle contraction
oki04625
C-type lectin receptor signaling pathway
oki04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
109872638
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
109872638
09153 Circulatory system
04270 Vascular smooth muscle contraction
109872638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109872638
Membrane trafficking [BR:
oki04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
109872638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
109872638
NCBI-ProteinID:
XP_020319533
Ensembl:
ENSOKIG00005026411
LinkDB
All DBs
Position
LG28:33532450..33651578
Genome browser
AA seq
1506 aa
AA seq
DB search
MSGIQSTLPERFSKKATRTPSILSKDHPPDKKPKSDKNTVPPVHEFDPTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLAQISLSEGEGGDLSSFLSSPHSPGPTGGTGERCVTSSTSPQDHITS
PLPLWEENNALHSQKVDILQKMLTKEQEDLQAMKEVYSRNPTAKLLKDIQEAKKHIPLLQ
SQLSKATGTPQDGSLSHQDGEVEEGGIEAADGEQTPSSQGESSSDGPWTNNAVSPSPLPE
NPCQRETPCHSPKTTPRESLNSCPSPDTEDTADLNCNFQSSVGSPFSRLNPQIIGAEDDY
FDTEQEQINGQCSCFQSIELLKSRPAHLAAFLHHVVSQFDPAPLLCYLYADLYKQTNSKE
TRRIFMDFHTFFMDRAANLKVAVPESMTSELERRRPELIPEELHRPYIQLLQDTLLPDIQ
RNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVSLERERSCSEHIISKIEEVLLTSQPTE
EEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPKIKKSIKPEKEGEEKVKKPRF
PSILGPPRRPSRVDSASISKAMELNKHRGPQKQLSQPALSVFEQPEFSAGGIRARSQFSD
PGSDAATHPLAYIAPPPHSAPASQGSDPTGRDSDSGLTPSSALPRLSTDGLHSGDTLDGM
VHLTSTHFDFSPCTLDQLQEEERESDRAQEGGTPKPAQRMDGLGCGDVPSEDDQGNEIEC
EQDPPNWQALVSREVLAGLTPLEIKRQEVINELFYTERAHLRMLKVLDNVFCQKLTRDSI
LPPGDIKHIFTNLEEIVQLHVWITEQMTVIRKKNETSVIDLIGDDLLAWFSDDEEEKIKR
AVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCRRLQLKDIIPVEMQRLTKYPL
LLESIAKYTEDAEERDKVKRAGECCRTILNYVNQTVKEAENKQRLEDYQRRLDLSSLKQS
ENPMISEFKSLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDERLVLKCH
SKNLAGTADTKHIFSPIINLNTVLVRSVATDNKSFFVLSMSDNGAQIYELMAQTVSEQRT
WQCLITQSAETMKTKTHIIPLLQTDVERDAVEIISTGVPKLNKDPERTSMGCTQSPEKDV
TSLPGLQPTPTSTNPFDSVKSDDEEEEDSPLPDRRKEQEEEEEVEEVDEEEVEAFLDGEL
ADRLPFLQERSRLGIAIDDEDPDDAFGMPPSRAEEALRTLAALRQVLLNHMTSRAEGSDK
DKEKGKEKEQRKGRAPGGRLLRTTSLRGPEDNNSISAPSSVAAPSTGSSENGASEKTEAG
REEEALGSNELPSGDTGFFETSEEYGSYMVLEGYGASGESSTDNDGQASGGGGGAQWGPD
IDLKKLLSSSSQTGGAGPKLRRQVMTHIRLLQANLQHLKEVETKYNELRQRLTETATDTE
ENKDNS
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcatacagtcaacactccctgaaaggttttccaaaaaagcaaccaggacccct
agcattctcagcaaggaccaccccccagacaagaaacccaagagtgacaaaaacacagtc
ccacctgtgcatgagtttgaccctacagggcttgtccagcgttgtgtgatcatccagaaa
gatgagaatggcttcgggttgacggtgagcggagacaaccctgtattcgtgcagttggtc
aaagaggatggcgctgccatgcgagcgggtgtccagacgggtgataggatcatcaaggtt
aacgggaccttagtaacacattcaaaccatgtagaagtcgtcaagctaataaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccggggctggcccagatctcgctgtcg
gagggcgaggggggagacctgtcctctttcctctcctcgccccactctcctggaccaacg
ggaggaacaggggagcgctgtgtcacctcctccaccagcccccaggaccacatcacctcc
ccgctgcccctctgggaggagaataacgcacttcacagccagaaggtggacatcttacag
aagatgctgaccaaggagcaggaggatttacaggctatgaaggaagtgtacagcaggaac
cccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctctgctgcag
agccagctcagcaaagccacaggcacacctcaggatggctccctctcccaccaggacggt
gaggtggaggaggggggcattgaggcagccgatggagagcagaccccctcctcgcaggga
gaaagcagcagcgacgggccctggaccaataacgctgtgtctcccagtcccctccctgag
aatccgtgccaaagagagacgccctgtcacagcccaaagaccaccccccgagagagcctc
aactcctgcccctcgcctgacacagaggacacggcggacctgaactgtaacttccagtcc
agtgtgggcagccccttctcccgtctcaacccccagataatcggagcagaggacgactac
tttgacacagagcaggaacagatcaatggtcagtgtagttgttttcagagtatagagctg
ctcaagtctcggcccgctcacttggccgccttcctccatcacgtggtctctcagtttgac
cctgcacctctgctatgctacctttatgctgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttccatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtctatgacctctgaactagagcggcggagacctgagctgatccca
gaggaactgcacagaccttacatacagctgttacaggacacactgctaccagacatccag
aggaacctagaagacttcaggcagaagcgcagcatgggtctgaccctcgcagaaggggag
ctggctaagctggacacagagagggtgagagaccgcgtgtcgctggagagagaacgctcc
tgttccgaacacatcatctccaagatagaggaggttctgctgacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgtcatcctcacctatatgaaacacctgggggtg
aaagtaaaggaaccgcgtagcctagagcccaaacgagtccgcatcaacttcctgcccaag
atcaagaagagcatcaaacctgagaaagagggggaggagaaggtgaagaagcctcgcttt
cccagcatcctcggccctcctcggcggcccagccgcgtggactcagcttcaatcagtaag
gccatggagttgaacaagcatcggggcccccagaagcagctctcccagcccgccctcagc
gtcttcgagcaaccagaattctcggcaggcggcatccgtgcccgcagccaattcagcgat
ccaggctctgacgcggccacccaccccttggcctacatcgcaccgcccccccacagtgcc
ccagccagccagggctccgacccgacgggacgcgactctgactcgggactcactccctcc
tctgccctgcccagactgagcaccgacgggctccactcgggcgacaccctggacgggatg
gtccacctaaccagcacccactttgacttcagcccttgcaccctggaccaattacaggag
gaggagcgtgaaagtgacagggctcaagagggaggcacgcccaaaccagcccagaggatg
gacgggttaggctgtggggatgtgccgagtgaggacgaccaggggaacgagattgagtgc
gagcaggaccctcccaactggcaggcgctggttagccgagaggtcctggcgggcctgact
ccactggagatcaaaagacaggaagtcatcaacgagctcttctacacagagcgagcacac
ctgaggatgttgaaggtgctggataacgtgttctgccagaaactaacccgagacagcatc
ctgcctcctggagacattaaacacatcttcactaacctagaggagattgtccagctacac
gtgtggataacggaacagatgacggtcattcggaagaagaacgagacgtcagtgatagac
ctgataggagacgatctactagcttggttcagtgatgacgaggaggagaagatcaagcgg
gcggtgggtaccttctgcagtaaccagccctttgccctggaactcatcaagacccggcag
aagaaagaccagcgcttcacctcctttatgcaggaggctgagagcaaccgtctgtgtcgt
agactgcagctgaaggatatcattccagtggagatgcagaggctgaccaagtatccacta
ctgctggagagcatagccaagtacacagaggatgcagaggagagggacaaggtgaagagg
gccggggagtgctgcaggacgatcctcaactatgtcaaccagacagtgaaagaggcagag
aacaaacagaggttagaggactaccagagacgcctggacctgtcctctctcaaacagagt
gagaacccaatgatctcagagttcaagagtctagacctgaccaagaagaagatggtgcac
gagggacctctctcctggaaggtcaacaaagacaagaccatcgagctgtacacgctgctc
ctggaggatatcctggtgctgctgcagaagcaggacgagcggttggtcctcaagtgccac
agcaagaacttggcgggcaccgccgacaccaagcacatcttcagccccatcatcaacctc
aacaccgtgctggtgcgctcggtagccaccgacaacaagtccttctttgtgctgtctatg
tccgacaacggagcccagatctatgagctgatggcccagaccgtgtccgagcaaagaacg
tggcagtgtctgataacgcagagcgcagaaaccatgaagacgaaaacacacatcatacct
ttacttcaaaccgatgtggagcgagacgcagtagagattatcagcacgggggtgcccaaa
ctgaacaaagaccctgagcgcacctccatgggatgtacccagtccccagaaaaagacgtc
acttccttgccgggtctgcaacccacacccacatcgaccaacccatttgacagtgtcaaa
tcagacgacgaggaagaagaggactcgccactgccagacagaagaaaagaacaagaagag
gaggaggaagtggaggaggtagatgaggaggaagttgaagcttttctggatggagagctg
gcagacagactgcccttcctccaggagaggtcacgcctgggcatcgccatcgacgacgag
gatcccgatgacgccttcggcatgccaccctccagagccgaggaggccctaagaaccttg
gccgccctgaggcaggtccttctcaaccacatgacgagcagagcagagggcagcgacaag
gacaaagagaaggggaaagaaaaggagcagaggaagggccgagcccctggaggccgcctg
ctgaggaccacgtccctgaggggcccagaggacaacaacagtatctcggccccaagcagc
gtagcagcaccctctactggctcctcggagaacggcgcctcggagaagaccgaggcaggg
agggaggaggaggccctggggtccaatgaactaccgtctggggacacaggtttctttgag
acttcagaggaatacggcagttacatggtcctggagggctacggggcctcgggggagagc
agcacggacaatgacggtcaggcgagtggcggggggggtggggcccaatggggcccggac
atcgacctgaagaagctgctctcctcatcctcgcagacagggggtgccggccccaaactc
agacgacaggtcatgacccacatccgcctgctccaggccaacctgcagcacctgaaggaa
gtggagaccaagtataatgaactgcgccaaaggctgactgaaacagctactgacacagag
gagaacaaagataatagttag
DBGET
integrated database retrieval system
