Oncorhynchus kisutch (coho salmon): 109872639
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Entry
109872639 CDS
T09179
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109872639
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109872639
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GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
109872639
NCBI-ProteinID:
XP_020319534
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Position
LG28:complement(31495122..31540253)
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AA seq
882 aa
AA seq
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MKGGGRGKEPPVEVSCKRPKRKCLQWHPLLSKKALDFSEEEEEDEEELEKEPLLVRETRG
PKVPCGGPPEGEEDSSEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
LEPKEKQKYTDMAKEYKDAFMKANPGYKWCPATNKPVKSPCHTVSNTRNKVWSFPSNSPK
GCATAKKLPKTDSTPQLNFAMADPTKMGGLSMLLLAGEHALTAREISSSSSQSGATDVTK
YPDKSSLFQLAEISSNTRQPSLMDTAGKGKPLSWGDQAEMWSGTSQQGKPDVPTANVKSP
LFQLAEQISSDSSQSTAPEGKQCGQSALFQLAEMCLASEAGKMETQDDTCTPHIKTETVV
EEAGDNTPDLPLSFPPSSSMPTDASLLLLRGQAAIIKRKKDASTREPPKVVDKDKSPGPG
SPKKTFKKRPSSESELESLFYTIEAVAKGAWGDAEEDMPKKKARTAAVTILVESSSPKKR
AKPKAKRPLKAKEDERNVKDKEDDGRTELPLTVETVVNPASPKIEAKEANISGSTEDPTS
PPSPPHIKHKVGERELEANAEGCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRSS
FRSASDEGGWIDETWAFSQMGPSNFKKLKKSKSKDETAPGLGKLEEEFEKKFNSLPQYSP
LTFDKKSTVVTKKKTDISTAPEEQPPKPAKGQSPSQKNTLFHKIVSNYKEKKKKPNTLDK
DIAMRSDSPMLDSAAKATEAKPSPAPCATATLNPEAMGTSHSVPVGSQKRKARKSKITHL
VRSADGRVSPAEEDKARDLTPEQDDKPLSQDTLCNATGCYNASKQEEADRSSAPEDLPAF
FSLAALAEVAAMENIHRGQHVIGDSQKKDMAKTPLLISCADQ
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtggaggaaggggtaaggagcctccggtggaggtgagctgcaagcggcccaag
cgcaagtgtctacaatggcacccgctactctccaagaaggccctggacttttcggaggag
gaagaggaggacgaagaagaactagagaaggagccattgttggttagggagacccggggg
ccgaaggtgccatgcggggggcccccggagggggaagaggactcttcagagcagcgggcc
cgccggcccatgaatgccttcctgcttttctgcaagcgccaccgatcgctggtgaggcag
gaacaccctcggctggacaaccgcggtgccaccaagatcttggctgattggtgggccgtg
ctggagcccaaagagaaacagaagtacactgacatggccaaggagtacaaggatgccttc
atgaaggctaacccgggctacaagtggtgccctgccaccaacaagccagtcaagagcccc
tgccacactgtcagcaacacccgcaataaagtgtggtccttcccttccaactcccctaag
ggctgtgccactgccaagaaactgcccaagactgacagcacaccacagcttaatttcgcc
atggcagatcccacgaagatgggtggcctaagcatgctactgttggctggggagcatgcc
cttactgccagagagatttcctccagctcatcacaatctggagccacagatgtcactaag
taccctgataaatcctccctattccaacttgctgagatctcttccaacacgcgtcagccg
agtttaatggacacagcgggcaaagggaagcccttaagttggggggaccaggctgaaatg
tggtctggaacctcacagcagggaaagcctgacgtacccactgccaatgtcaagtcccct
ctttttcaactggcagagcagatctcctctgattcgagccagtcgactgcaccagaggga
aagcagtgtggccagtccgctctcttccagcttgctgagatgtgcttggcctccgaggca
gggaagatggagacacaggacgatacctgcaccccacacatcaaaactgagactgtggta
gaggaggctggggacaacacccctgatcttcctctctcctttcccccatcttcctccatg
ccgaccgatgctagtctcctgctgctcagaggccaagcagccataatcaaaaggaagaaa
gacgccagcaccagagagccgcccaaagtggtggacaaagacaagagccctggtcccggc
tcacccaaaaagaccttcaagaagcgaccttcatccgagtcggagttggagagcctcttc
tacactatcgaagccgtggctaaaggggcctggggcgatgccgaggaggatatgcccaag
aagaaggctcgcaccgccgccgttaccattctggtagagtccagctcacccaaaaagagg
gccaagcccaaagccaagaggcccctgaaggctaaggaagatgagagaaatgtaaaggac
aaagaggacgatggacgcacagagcttccattgacagtggagacggtggtgaatccagca
agccccaagatagaggctaaggaggccaatattagcggcagcacagaggatcccacctcc
cctcccagccccccgcacatcaagcacaaagttggggagagggaactagaggccaacgca
gaggggtgtggctccagaaagtctgagagaagctgcaagggggcgctgtacaagaccctg
gtgtcggaagggatgctgacctcactgagggccaacgtggacagaggcaaaagaagttct
tttcgaagtgcatctgatgaaggaggctggattgacgagacctgggctttctcacagatg
ggacccagtaatttcaagaagcttaagaagtccaaatccaaagacgagaccgcgccaggt
ttggggaaactagaggaggagtttgagaagaagttcaacagcctgccgcagtacagccct
ctgacattcgacaaaaagagcaccgtcgtcaccaagaagaaaactgacattagtaccgca
ccggaggaacaacctccgaaacctgccaagggtcaatctccatctcagaaaaatacttta
ttccacaagattgttagcaattacaaggagaaaaagaagaagcccaatactttggataaa
gacatagcgatgcgtagtgactcccccatgttagactcggctgccaaggccaccgaggca
aagccgagcccagccccctgtgccaccgccacgctgaacccagaagccatgggaactagc
catagtgtgccagtgggcagccagaaaaggaaggccaggaagagcaagatcacccacttg
gtgcgctcggccgacggcagggtatccccagccgaagaggacaaagccagggatctgacc
ccggagcaggatgacaagccattatcccaagatactttatgcaatgcaacagggtgttac
aacgcatccaagcaagaggaagcggacaggagcagtgcacctgaagacctgcctgccttc
tttagcctggctgcccttgcagaggtggcagccatggagaacattcacagaggccagcat
gtgattggtgacagtcagaagaaagacatggccaagacccctttgctcatctcctgcgct
gaccaatga
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