KEGG   Oncorhynchus kisutch (coho salmon): 109872920
Entry
109872920         CDS       T09179                                 
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 1
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109872920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oki03041]
    109872920
   04121 Ubiquitin system [BR:oki04121]
    109872920
Spliceosome [BR:oki03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    109872920
Ubiquitin system [BR:oki04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    109872920
SSDB
Motif
Pfam: SART-1 HIND
Other DBs
NCBI-GeneID: 109872920
NCBI-ProteinID: XP_020319934
Ensembl: ENSOKIG00005039411
LinkDB
Position
LG28:complement(9131015..9139978)
AA seq 783 aa
MGSSKKHKEKGRDKDAEERHREHKKHRHKERDKERNVTREREKRKRSRSKERSGRGSERE
GRSKGERSAGEPRVKKEKVEAGYQESPGIGPQSASGDASLSIEETNKLRAKLGLKPLEMT
DTTKELGTKEQPMVAETINPVYIKQQNEMREKLAAMKEKRLLNKKLGKVKTLAEGDWLDD
TVAWVERSRKMAKEKELAEKRAKLLQEMDEEFGVSNLVDEEFGQTKKAAYSSRDLKGLTV
QHRMESFNEGETVILTLQDQGVLEEEGDVLVNVGLVDKEKAEKNVELKKKKPDYKAYEED
ESVDDMATFKPRTVLGKYDEEIDGEKKKSFQLSKGGCAEGERERELQAIRETLRNQAQSL
EMPALAIASEYYTPQEMVGFKKTKQRVRKIRKKALPDELQLDDTRNTDFGSRVRGRGRRQ
LDEGQEVSKEGVIIPGLDVPQQSDDIRMADMDISDDEDFIPTEPAVLEEDEAEQDLQKQL
EKQRKLKQKQLEKQRKLKQKQLLQDSGEKVAEQVPWLARVDGSDDEDNKNNLNIVFNATS
EFCRTLGDIPTYGLSGNREDQEDIMDFEQEAARDGAGGSDSDEDENVGWSIVNVDEEQKQ
PDFSTASTTILDEEPIVSSGLAAALALCKNKGLLDTQMQKISRVRAPTGALPNDNYSIED
KMTIDDKYSRREEYRGFTQDFKEKDAYKPDVKIEYVDESGRKLTPKEAFRQLSHRFHGKG
SGKMKTERRMKKLEEEALLKKMSSSDTPLGTVALLQEKQKSQKTPYIVLSGSGKSMNANN
ITK
NT seq 2352 nt   +upstreamnt  +downstreamnt
atggggtcgtcgaagaaacataaggagaaagggcgtgataaggatgcagaagagcgtcac
cgcgaacacaaaaaacaccgtcacaaggagcgggacaaggaacgaaatgtcacccgagag
agggagaagaggaaacggtccagatcgaaggaaaggagcggacggggttccgagagagaa
ggtcgcagtaaaggcgaaaggagtgctggggagcctcgcgtaaagaaagaaaaagtggag
gccggatatcaagagagtccaggaattggaccacagtctgcaagtggagatgcctcactt
agcattgaagagacaaacaagctgagggccaagcttggtctgaagcctctggaaatgact
gacacaactaaagagctcggtacgaaggagcagccaatggttgcggagacgatcaatcct
gtgtacatcaaacagcagaacgagatgagggagaaactggcggctatgaaggagaagagg
ctcctcaataagaaactggggaaagtgaagactttagcagagggagactggctggacgac
actgtagcttgggtggagaggagccggaagatggccaaagagaaagaactggcagagaag
agagccaaacttctgcaggagatggatgaggagtttggtgtgagcaatctggtggatgag
gagtttggccagaccaagaaggccgcttacagttctcgggacctaaagggtctcactgtg
cagcataggatggagtcatttaatgaaggggagactgtcatcctcacactgcaagaccaa
ggtgtgcttgaagaggagggtgatgtacttgtaaacgtgggtctagtggacaaagaaaag
gctgagaagaatgtggagttgaagaagaaaaagcctgattacaaagcttacgaagaggac
gagagtgtcgatgacatggctacgttcaagccgcgcactgtgctgggcaagtatgatgag
gagattgatggagagaagaagaagagtttccagctgagcaaagggggctgtgctgagggg
gaacgggaacgggagctgcaggccatccgggagaccctgaggaaccaggcccagtccctg
gagatgcctgctctcgcaattgcctcagagtactacacaccacaggagatggtgggcttt
aagaagaccaagcagcgcgtcaggaagatcaggaagaaggcgttgcctgacgagctccaa
ctagacgacacgcgcaacaccgacttcggctccagggttcggggtcggggtcgcaggcag
ttggatgagggccaggaggtgtcaaaggagggtgtcatcataccgggactagatgtaccc
caacagtctgatgacatcaggatggcagacatggacatcagtgacgatgaggacttcatc
cccactgagccagctgtgctggaggaggacgaggcagagcaagatctgcagaagcagctg
gagaagcagaggaagctcaaacagaagcagctggagaagcagaggaaactcaaacagaag
cagctgctccaagactctggggaaaaggtggcagagcaggtcccatggcttgcaagagtg
gacggcagtgacgacgaagacaacaagaacaacctgaacattgtatttaacgccacctct
gagttctgcagaactctgggtgacatccccacctacggtctgtcaggaaacagagaggac
caggaggatatcatggatttcgaacaggaggcggcgagagatggggccggaggatcagac
tcggatgaggatgagaacgttggctggagcatcgtcaacgtggatgaggaacagaagcag
cctgatttctccacagcatcaaccaccatcctggatgaagaacccatcgtcagctctggg
ctggctgccgccttggcgctgtgcaagaataagggtctcttggacactcaaatgcagaag
atatcccgtgtccgtgctcctaccggtgccctgcccaatgataactacagcattgaggac
aagatgactatagatgacaagtacagtcggagggaggaatatagaggctttacccaggac
ttcaaggagaaggacgcctacaagcctgacgtcaagattgagtatgtggatgaatctggg
cggaagctcactcccaaagaggctttccggcagctctcacatcggttccatgggaagggg
tctggcaagatgaagactgagaggaggatgaaaaagctggaagaggaagcgctgctgaag
aagatgagcagtagtgatacccctctaggaacggtcgctttgcttcaggagaaacagaag
tcacaaaaaacaccttacattgttctgagtgggagtgggaagagcatgaatgcaaacaac
atcaccaaatag

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