Oncorhynchus kisutch (coho salmon): 109872936
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Entry
109872936 CDS
T09179
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109872936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109872936
Spliceosome [BR:
oki03041
]
Complex B
Other components
Prp19-related factors
109872936
Complex C
109872936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
zf-CCCH_2
RRM_occluded
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
RRM_YTH1
zf-CCCH_10
RRM_3
zf-CCCH_PARP12
zf-C2H2_16
Motif
Other DBs
NCBI-GeneID:
109872936
NCBI-ProteinID:
XP_020319953
Ensembl:
ENSOKIG00005039952
UniProt:
A0A8C7JUR3
LinkDB
All DBs
Position
LG28:1182769..1187213
Genome browser
AA seq
438 aa
AA seq
DB search
MLFFCIACWEANFLKMATSLGANIYNRQNWEDADFPILCQTCLGENPYIRMTKEKYGKEC
KICARPFTVFRWCPGTRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSIKD
DVPKSDVNKEYYTQNMEREIGNSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHIC
SFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDT
PEDKSISTLYVGGLGDSITDSELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAE
KSFNKLIIKGRRLNVKWGRSQGARGKEGREREGVTEMGMKLEPVPGLPGALPPPPADEDA
PTNYFNLGPNSAPPVMNISLPPPPGVAMPPPGFGPPMFHSMDPMAIPHPIGMRPPGHVHY
PSQDPQRMGAHASRHGGS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgctttttttctgcattgcatgctgggaagcaaactttttgaaaatggcgacatcttta
ggagctaatatttacaacagacaaaattgggaagacgcggattttcctattctctgccag
acatgtcttggagagaatccttatattcgaatgaccaaggagaaatatggcaaggagtgc
aagatatgtgccaggcccttcacagtgttccgatggtgtcctgggacccgcatgcgattc
aaaaagacagaggtgtgccagacgtgcagtaagatgaagaatgtctgtcagacgtgcctg
ctggatctagagtatggcttgccaatacaggtccgagacactgggctgtcaatcaaggac
gacgtgccaaaatccgatgtgaacaaggaatactacactcagaacatggaaagagagata
gggaactctgatggtacacggccagtgggtctcctgggtaaggcccccagctctagtgac
atgctgctgaagctagcccgcaccacaccttactacaagaggaacagaccacatatctgc
tccttctgggtgaagggagagtgtaagagaggagaagagtgtccctacaggcatgagaag
ccaactgatcctgatgatcccctggcagaccagaacattaaggaccgttactatggtatc
aatgaccctgtggctgacaagctgctgaagagggcctccaccatgcctagactggatacg
ccagaggacaagtccatcagtacgctgtatgtgggggggctcggagactccatcactgac
tcagagctcaggaaccatttttaccagtttggggagatccggaccaccaccatcgttcag
aggcagcagtgtgccttcatccagtttgccacccgtcaggctgcagagttggctgctgag
aaatccttcaacaagctcattatcaaaggtcgcagactcaacgtcaagtggggcaggtcc
cagggagcgcgggggaaggagggaagggagagggaaggggtgactgagatggggatgaag
ctggagccggtacctggactgcctggagcgctacctccgccacctgcggatgaagacgcc
cctaccaactatttcaacctgggccctaactcagcccctcctgtcatgaacatcagtcta
cccccaccccctggcgtggctatgccccctccaggctttggcccacctatgttccactcg
atggaccccatggcgataccccatcccattgggatgaggcctcctggccatgtccactac
ccctcccaggatccacagcgcatgggtgcacacgccagtcgtcacggaggctcctag
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