Oncorhynchus kisutch (coho salmon): 109872967
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Entry
109872967 CDS
T09179
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X6
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109872967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109872967
03036 Chromosome and associated proteins [BR:
oki03036
]
109872967
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109872967
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
109872967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
109872967
NCBI-ProteinID:
XP_020319993
Ensembl:
ENSOKIG00005026209
UniProt:
A0A8C7HP44
LinkDB
All DBs
Position
LG28:complement(18964269..18992190)
Genome browser
AA seq
1807 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAPSGTSTSLFGSTSTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTASSGGLFGATNSNPFGGASTSLFGASGFTQQAAQPGT
TVKFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMA
APTGGLFGPAAAATPSTGTTGLFGSSATNTGFSFGQAKTSFGTSAGGFGAATGSLFGQQQ
PQQVQQAVSLFKPFGQATTTPNTGFSFGSTMGQPQQTSTMGGLFGATAASQAGGLFGNTA
QTAPATGFGTGTGLFGQTNTAFGNVGTQQGLFGNKTAGFGVTTTSAPSFGTGTGLFGNKP
ALSLGTATNTSNFGFGPTAAGGSLFGNKTAAGGLGTGLGASFGAVGTGQMSLFGNNKTLG
STLGTMGGFGVQGFSTGNSTLGFGAPQQPVAVTDPNAVAAQQAVLQQQINALAYSPFGDS
PLFRNPLSDPKKKEERLKPTNPVAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLF
DGLDDDEPSLTNSAFMPRKSIKKLVLKNLNGSSLYSSPINRDSDDLSSPPEYPLNGLGAS
VDEDDDVVEGGAENDLEIKFYAKPNLLDTISELKAHRMGAGGRNGLEVSSEDISLGDDSI
QEERVEGPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTVGRKGYGSVFFHGE
VNVTGLNLDEIVHFRRKEVIVYLDDKNKPAEGEGLNRRAEVTLDGVWPNDKTTCTQIKSP
ERLSEMNYEGRLENASRKQGARFLEYRSETGSWVFEVAHFSKYGLQDSDEDEEVPLKLDP
KKLKTATRLPPGLLPPSQQQVAPQAQSTAVLELLNRMSEVDSDMADITQDAPGESMLGEE
EGESGMGEKGSRLGNVTPSEHDSVSASSQIASSLGINPHTLQIMKASLFAEADDGDMFQE
QGGTTSSLDVASPRIHLPGTQGRPSIGGLLQTRFSGAGLFQHPDVPFGGGLPGRLSMSRV
SPAVPEPSRVSPWPSFLLLAPPAEATVRTVGARRLGGPVDLENSVTLGKGRLLMDAALFT
GRSFRVGWGPGWTLVHCGDGLSGAGDKEQDHGDTGAAGFGFLPKPAKSRLLSDSPFKVVI
EQVVGLELQNSEESQEVYQRPLEISLKHSSISTEGACPFIQPQSGVAALHEYAEWVTDLN
QEAGAGDAVLGHWAQVWTLCEALWGRRCSAGPGTSGYLQQMERRRSFSAWLSHSATQRIE
QEVGLNQGGGNVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQAVGSQYGRELLALQL
GDWNRMQTDSFLLEERLRIFALLAGKPVWQSTDCVVNVCSELDWKRCMAVHLWYMLPPTA
SIAEALVKYEVAFQGSAEGQKYACAPLPPYLDQSDQPDMEEEESKRPLYDICFHLLKLYS
DRHYSLQQLLDPLAVTWDRLDYRLSWHLWSVLQALHYTHLSPARQGLIHTSYAAQLESAG
LWDMAIYVLLHIPDNTLRERAVREMLQLHCPLLETEESAKKEHFLTERLLIPEQWLHQAK
ATRARRDTDRPGEALHLYRAGHWNLCHSLVIQHLASDCIINDNHEYLLKFLEGLAVPERS
AVIPDWDTAGRVYLDYIRVVQTLHAIQQMDSTGYELECLRTEVRSLCSRIELLPCSTAKD
RLAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLASNIGRLPMPEDYALEELRSLTQSY
LSQLIVS
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtgctccctttgggggagggactggaggatttgggacatca
tccacatttgggcaacaaaacactagctttggggcggcaacaggtggcttcggagcctca
gcgtttggggcgaccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcagcaaatccacactggtgcaggtagaggaggtggcctatttggt
tccagtaccttcagccagcctgtgacatcatccaccagtagcggctttggctttggcgca
cccagcggcacctccaccagcctgttcggcagcaccagcacgggcggcggtggaggactc
ttctcccagcagagcaatgccttcggcgccgccaagccagcctcttttggcacgttcggt
acgagcacggccagcagtggggggctgtttggggcaaccaactccaaccctttcggaggg
gcgtctacctccctgttcggagcatcagggtttacccagcaggctgcccagccaggcacc
acagtcaagttcaaccctccaacaggaagtgataccatggtgaaagggggtgtgacgaca
agcatcaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggtttgaggactaccaggcagggaggaagggacccactaaccctatggct
gcaccaacagggggtctctttgggcctgcagccgcagccacccccagtacggggactaca
gggctgtttggctcctcagccactaacacaggcttctccttcggccaggccaaaacctcc
ttcggaactagtgcgggtgggtttggtgcagccacaggcagtctgtttgggcagcagcag
ccccagcaggtccagcaggcagtcagcctgttcaagcccttcggccaggccacgaccacc
cccaacacaggcttctccttcggcagcaccatgggccagccccaacaaaccagcaccatg
gggggtctgtttggggccacggcagcgtcccaggcaggggggttgtttggaaacaccgct
cagaccgcaccagctacgggctttgggacaggcaccggactctttggacaaaccaacacc
gctttcggcaacgtcggcacacagcagggcttgtttggtaataaaacggcagggtttggt
gtcaccaccaccagcgccccgtcgtttggcacgggcaccggcctcttcggcaacaaacct
gccctctctctcggaacagcgaccaacacatccaactttggttttggacccactgctgct
ggtggaagcctttttgggaacaagactgcagcaggaggactagggaccgggctgggagcc
agctttggagcagtaggcactggtcagatgtctctgtttgggaataacaagacgctgggc
tccactctgggaacaatgggaggttttggagtgcagggattcagcacaggaaacagcact
ctgggcttcggagcgccacaacagcccgttgcggtgacggaccctaacgcggtggcggcc
cagcaggcagtgctgcagcagcagatcaatgctctggcctactcccccttcggagactcc
cccctcttcagaaaccccctctctgatcccaagaagaaggaggagcgtctgaagcccacc
aatccggtggcccagaaggcgttgaccacaccaactcactacaaactgacaccgcgacct
gcgacacgtgtgcggcccaaagctctgacatcatcaggctcctccaagtcccagctgttt
gatgggttggatgacgacgagccttctctcaccaacagtgccttcatgcccaggaagagc
atcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagcagcccaatcaac
agagactccgacgacctgtcttctccaccagagtaccccctcaacggactcggtgccagt
gtggacgaggatgatgatgtggtggagggaggagccgagaacgacctggagatcaagttc
tacgccaagcccaacctactggacaccatctcagagctcaaagcccataggatgggggct
gggggcaggaacgggcttgaggtcagcagcgaggacatatcgctgggagatgactccata
caggaggagcgagtggagggccccccccaccctgcaggtatcgttctgggccgtgtgggc
tactacaccatccctgccatggacgagctggccaaaatggtggacgaaaacggggtgtgt
gtggtggaaaactttaccgtgggcagaaaaggttacggctctgtgttcttccatggtgag
gtgaacgtgactgggctgaacctggatgagattgtccatttcagacgtaaagaggtcatc
gtctaccttgacgacaagaacaagcccgctgagggggaggggctcaacaggcgagcagag
gtgactctggatggggtgtggcctaatgataagaccacctgtactcaaataaagagccct
gagcgtctgtctgagatgaactacgagggccgcctggagaatgcctcacgcaaacagggc
gcccgcttcctcgagtaccgctccgagacggggtcctgggtgtttgaggtggcccatttc
tctaagtacggcctgcaggactctgacgaggatgaggaagtccctctcaaattggacccc
aagaagctgaagacggcaacaagacttccaccagggctgctgcctccctcccagcagcag
gtggcaccacaggctcagtccacagcagtgctggagctgctgaatcgcatgtcggaggtg
gacagtgatatggccgacattacccaggatgccccaggggagagcatgttgggggaggag
gaaggggagagtggcatgggggagaagggaagtcggctggggaatgtgaccccttcggaa
cacgactctgtctcagcgtccagtcagatcgcctcctcgctggggatcaaccctcacaca
ctacagattatgaaggcatccctgtttgctgaggccgatgatggtgacatgttccaggag
cagggagggacgacaagttctctagatgtggcctctcctcgcatccacctgcctggcacg
cagggtaggccctccattggtggtctcctgcagactcgtttcagcggtgccggtctcttt
cagcaccctgacgtgcccttcggtgggggccttcccggcaggctatccatgtctcgggtg
tcgccggcggtgcctgagccttcgcgggtctccccctggccctcttttcttttgctagcc
ccaccggccgaggccactgtacggacagtaggggctcggcgcctggggggacctgtggac
ctagagaactcagttacactggggaagggccgtcttctgatggatgcggctttgttcacg
ggccggtcatttcgggtgggctggggtcctggctggactctggtccactgtggagacggg
ctaagtggggccggggacaaggagcaggaccacggagacacaggagctgcaggctttgga
ttcctgcccaaacctgccaagagtagactactgtcagacagtccattcaaggtggtgatt
gagcaggtggttggtctggagctgcagaacagtgaggagagccaagaggtgtaccagcgg
cccctggagatcagcctgaagcacagcagcatcagtacagagggggcctgccccttcatc
cagccccagagcggtgtggccgccctgcacgagtacgcagagtgggttactgacctcaac
caggaggctggtgctggagatgcagtcctgggtcactgggctcaggtgtggactctgtgt
gaggccctgtggggccgacggtgttcggcagggcctggtaccagtggctacctgcagcag
atggagaggagaaggagcttctcagcctggctgtcccacagtgccacccagaggatcgag
caggaagtgggcctgaaccaggggggaggaaacgtggaggccatctttagctacctgact
ggacaccggatcagtgatgcctgcaggctggctcagaagagtggggaccaccgtctctcc
ctgctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcactgcagctt
ggagactggaacaggatgcagacagactctttcctgctggaggagaggctacggatcttt
gcccttctcgctgggaaacctgtgtggcagtctacagactgtgtggtgaatgtgtgttca
gaactggactggaagcgttgtatggcggtccacctgtggtacatgctgcctcccaccgcc
tccattgctgaagccctggtgaagtacgaggttgccttccagggctctgctgagggtcag
aagtatgcctgcgccccccttcccccctacctcgaccaatcagaccagccggacatggag
gaggaagagtctaaacggccgctttacgatatctgcttccacctgctcaaactctacagc
gacaggcactacagcctgcagcagttgttagaccccctggcggtgacgtgggatcgtctt
gactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacacctc
agcccggcccgacagggcctcatacacaccagctatgctgcccaactggagagtgctggc
ctctgggacatggccatctacgtactgctgcacatacctgacaacacgctgcgtgagcgg
gcggtgagggagatgctgcagctgcactgccccctgctggagacggaggagtctgccaag
aaagagcactttctcacagagagactactgatcccagaacagtggctccaccaggccaaa
gctaccagagccagaagagacacagacagacccggagaggcccttcacctgtacagagca
ggacactggaacctctgccacagtctggtcatacagcaccttgcctcagattgcatcatt
aatgataatcatgagtacctcttgaagttcctggaggggcttgcagttcctgagcgcagt
gctgtgatcccggactgggacacggcgggcagagtctacctggactacatcagagtcgta
cagaccctacacgccatacaacagatggacagtactggttatgagctggagtgtctacgc
actgaggtgaggtcactctgcagcaggatagagctcctcccttgctccaccgccaaggac
cgcctcgcccaatcagagatggccaagcgtgtggctaacatcctgcgtgtggtgttgagt
ctgcagcagggtggtgagggtggcgagatccccttgtcccagcttgcatccaacatcggc
cgtctgcccatgcccgaggactatgctctcgaggagctccgcagtctcacccaatcatat
ctgagccagctcattgtcagctaa
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integrated database retrieval system
