Oncorhynchus kisutch (coho salmon): 109873016
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Entry
109873016 CDS
T09179
Name
(RefSeq) transcription factor Sox-19a isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109873016
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109873016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
HTH_24
Motif
Other DBs
NCBI-GeneID:
109873016
NCBI-ProteinID:
XP_020320084
Ensembl:
ENSOKIG00005044214
UniProt:
A0A8C7K9U4
LinkDB
All DBs
Position
LG28:2404647..2412910
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AA seq
322 aa
AA seq
DB search
MVNMYNIIEHQLKSSVPSHHPGTGMPPANGVGGHEGGHTGSKLPTIQPDPMDKVKRPMNA
FMVWSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPD
YKYKPRRKTKPMPKNNTLAAQYQMSAGNHLLSASAAQGQVGNPRMDAYGWGHTGGYTAAM
QSEALGYSQQLHRYDLSALQYQSSMAQAQAYMNGANAYSPMSYNSSPQQVSPVMSMVKQQ
SDGHSMSPSPTGPHSPLQQHHHQAHQQHQTQRGIQVQGDHLRDMISMYMPGGDASEAQRG
YSVSAANIQQHYLGGSAPLTHL
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatgtataacattatagagcaccaactcaagtcctctgttccttcacatcat
cctggaacaggaatgccacctgcgaacggagtaggggggcacgagggcggccacacaggt
tccaaattaccgacaatccaacctgacccaatggacaaagtcaagcggcccatgaatgcc
ttcatggtctggtctcgcggtgagcgacggaaaatggctcaggaaaatcccaaaatgcac
aattctgagatatccaaacggctgggtgtcgcgtggaaatctctaacagacgctgagaaa
aggcccttcattgacgaggctaagcgcctccgcgcggtgcacatgaaggattatccggac
tacaaatacaagccccgtcgtaaaaccaaaccgatgccgaagaacaatactctagccgcc
cagtatcagatgtcggccggtaaccacctgctgagtgcgtccgcggctcagggacaagtt
ggaaaccccagaatggacgcatatggctggggccacacagggggctacactgcggcgatg
cagagcgaggcgctcggctacagccagcagcttcaccgctatgacctgtcagcacttcag
tatcagtccagcatggcccaggcccaagcctacatgaatggtgccaacgcatacagcccc
atgtcctacaacagcagcccccagcaggtcagcccagtgatgtccatggtgaagcagcag
tctgatggccacagcatgtccccatcccccaccgggccccacagccccctccagcagcac
caccaccaggcccaccagcagcaccagacccagcgtggtatccaggtccagggagaccat
ctcagggacatgatcagcatgtacatgcctgggggagatgcctcagaggcccagagaggg
tactccgtctctgcagcaaacatccagcagcattacctgggagggtcagctccactcacc
cacctttga
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