Oncorhynchus kisutch (coho salmon): 109873129
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Entry
109873129 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 8 isoform X3
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109873129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109873129
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109873129
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109873129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
EKR
Motif
Other DBs
NCBI-GeneID:
109873129
NCBI-ProteinID:
XP_020320267
Ensembl:
ENSOKIG00005040632
LinkDB
All DBs
Position
LG28:23547326..23552842
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AA seq
285 aa
AA seq
DB search
MPAALADTSQIICEVWASNVDEEMRKIRQIIQSYNFIAMDTEFPGVVVRPIGEFRSTVDY
QYQLLRCNVDLLKIIQLGLSFMNEDGDYPPGTTTWQFNFKFNLTEDMYSQDSIDLLQNSG
LQFKKHEEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDTRLPEEEHE
FFQILNLFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFR
MKELFFEDNIDDAKYCGRLYGLGSGSTQNQNGISSSSQEETNNKH
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgcactggcagataccagtcagattatctgtgaggtctgggcaagcaatgtg
gatgaggaaatgaggaaaatccgacagataattcaaagctacaacttcattgccatggac
acagaattccccggagtggtggttcgacccattggcgagtttcgcagtacggtagactac
cagtaccagctcttgaggtgcaacgtggaccttctgaaaatcatccaactgggactgtca
tttatgaacgaggatggagactatccccctggaacgacgacatggcagttcaatttcaaa
tttaatttaacagaggatatgtactcccaggactcgatagacttacttcagaactccggc
ctccaattcaaaaagcacgaggaagaggggattgacacactctactttgctgagctcctg
atgacatccggtttagtgctgtgtgaaaatgtcaagtggctctcctttcacagcgggtac
gattttggctacctggtgaagctattaacagacactcggctacctgaggaggaacatgag
ttcttccagatactcaatctcttcttccctgcaatctatgatgtcaaatatctgatgaag
agctgcaaaaacttgaagggaggactccaggaggtggctgaccagctggaattaaagagg
atcgggagacaacaccaggccggttcggattcgctgctcacagggatggccttctttagg
atgaaagagcttttctttgaagacaacattgatgacgcaaagtattgtgggcgattgtat
ggattgggctctgggtccactcaaaatcagaacggcatctcaagctcttcccaagaggaa
accaacaacaagcactga
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