Oncorhynchus kisutch (coho salmon): 109873234
Help
Entry
109873234 CDS
T09179
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X3
KO
K20775
BRCA1-A complex subunit RAP80
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109873234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oki03400
]
109873234
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
109873234
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
109873234
NCBI-ProteinID:
XP_020320436
Ensembl:
ENSOKIG00005044404
UniProt:
A0A8C7KC90
LinkDB
All DBs
Position
LG28:complement(24654430..24675583)
Genome browser
AA seq
1105 aa
AA seq
DB search
MPPRKKQENRGTDDCPRKRRRAQEEGNVVISDRDEDEDFRPTSSSSRGERKREKESRTRT
NEMTEEEMLDLAMRLSKQEASSAALRQRQEEEAVRKAIAESLYADSPTHPHSESSLGSGG
PTQQCQNSPPEGESSIQPPRCKLSYPNHGVADREGACGGGVHVEVAPSDRRRKGKKEGSP
SQSSPLSQASTSVPLPSSQEEGSSQRNLFGDRSAKAIESQDYNNSTKSDSQSQLRIKSPG
FPSTTAPQANKPVLCLEKLSQDLLVDCQASGFLLKGHPSLTLPTKSQKSQSYQPKSPTFS
NTPVFSKTERGVEPGQSSPSFPKRAMFSNCDSGEEEKEASPTIPKSLVFFKTDRGKAEEQ
GSPTSPKSTMFSKTERGPEEKETFSGSPVFPRTDQIRDQGPQSCVESVSATGDYEDGDRD
DAVKSRDASECLPPCPRTTLSLNKRFVPIRKTAGVSDKVVDQEEREGESSQRTVNRISMP
AKLAAEEDLNSEELTLALETQPMQELTSNMALRWSDDDEEENGPEKSAHSPSPVFPQEND
LPQPSNQGLSPNTHDHRSPQHKHSPCLVPKKRTHNFEGAACEEGESQSKCIRKKFTLKGM
YGAPCPSLLRQAAGRSQDEAKGGSTSSHQPLASSSRLSPPTDGQGYGGVVRYYWGVPFCP
LGQNPDAYTQVILSQLEVYEKSLKEAQRGLLRKAGWGEPVLPGPPEKPFSRRGRLERRRA
PRLMEEEERGGKRQEELVEVVEDDDEDEGEKRKSPSPVFHADTSQLILLQRRLGLRRKEE
RLAEKQPPDLLEEREEDEKEEKMDDKEGGEKREEEEVDVRGLQVPETQLSDDSTQDLMVT
SPAQPQPESQSLPQIQTFLSSPRPLEQREEGMLVVGEEEGRRSSPVGIPAVGEDVRMEED
IPEPAFPRSPNMDCPMCMRLFPLTEIEMHAAYCDGTTGIMEEEMAEESHSQGDFLLQDIS
VKARRKRTRRGENIGEEQPSSSGSGKVVQGEKCFLCQQLFPLKYHEKHVEDCIKNKEFSK
AAPRDGQSGDFLSALDQTEHIYSGTAEAKPCDTTINNQQSGLIDDLDTAESGGRGDFSAP
GFRVSTSPIQSFTPVSEATDCLIDF
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcggaaaaagcaggagaacagaggcaccgatgattgtcccaggaaacgacga
cgagctcaggaagagggcaatgtcgtcatctcagacagagacgaggatgaagacttcaga
ccgacatcatcatcatcaagaggggagcgcaaacgggagaaggagagtagaacacgaaca
aacgagatgacagaggaggagatgctggacctggccatgagactgagtaaacaggaggcc
agcagcgctgctctccggcaacgacaggaggaagaggccgtgaggaaggccatcgctgaa
agcctctatgcagacagccctactcatccccactcagaatcttcgctcgggtcagggggc
cctacacaacaatgtcaaaattctcctccagagggagagagcagcatacagccccccagg
tgtaaactctcctaccctaaccatggtgtggctgacagggagggagcctgcggtggaggt
gttcatgtagaggtggctccctcagacaggaggaggaaggggaagaaggagggaagccca
tcccagtcctcccccctcagccaagcttccacctcagtgcctctcccatcctcacaggaa
gaggggtcttctcagaggaaccttttcggagaccgctcagccaaggcaattgaatctcag
gactacaacaactccacaaagagtgactcccagtcccaactcaggatcaagtcccctggt
ttcccttccactacggctccccaagccaacaaacctgtcctgtgcctggagaagcttagc
caggacctcctagtagactgtcaggcctctgggttcctactaaagggtcatcccagctta
acgcttcccacaaagtcccagaaatctcaatcttatcagcccaagagccccacattctcc
aatacccctgtgttttccaaaacagagagaggtgtggaaccaggccaaagtagtccctcc
tttcctaaacgtgccatgttctctaattgtgattcaggagaggaagaaaaagaggccagt
cccaccattcctaaaagcctggtctttttcaagactgatagaggaaaggcagaggaacaa
gggagtccaacttctcctaaaagcaccatgttctctaagactgaaagaggaccagaagag
aaagagaccttctctggaagtccagtctttcccagaactgatcagataagggaccagggt
ccacagagctgtgttgaaagtgtctctgcaacaggagactatgaggatggagacagagat
gatgctgtgaagagcagggatgcctccgagtgccttccaccatgccccagaacaaccctg
tccctgaacaagagatttgtgcctataaggaagactgctggagtttcagacaaagttgtt
gaccaagaggaacgcgagggtgaatcctcgcagagaactgtaaacaggattagcatgcct
gcaaagttggctgcagaagaagaccttaattcagaggaacttacattggctttggagact
cagccaatgcaggagttaaccagtaatatggcgctacgctggtcagatgatgacgaagag
gaaaatggtcctgaaaagtcagctcactcgcccagcccagtcttcccacaggagaatgac
ctccctcagccaagcaaccagggtctctccccaaacacccacgaccaccgttccccccaa
cacaaacacagcccctgcctcgtccccaagaaacgcactcacaacttcgaaggcgccgcg
tgcgaggagggggagagccagtccaagtgcatccggaagaagttcaccttaaagggcatg
tatggagccccctgtccctctcttctcagacaggctgcaggtaggagccaggatgaggcc
aaaggcggaagcacctcttcccaccagcccctggcctcctccagccgcctctctcccccc
acagacggccagggttatgggggagtggtgcgctactattggggtgtgcctttctgtcca
ctggggcagaacccagacgcctacacacaggtgatcctgtcccagctggaggtgtatgag
aagagcctgaaggaggcccagaggggtctgctgaggaaggcaggctggggggagccagtc
ctccctgggcccccagagaaacccttctccaggaggggacgcctcgagagacgcagggcc
ccacgactcatggaagaagaggagagagggggaaaacgtcaggaagagctagtggaggtg
gtagaagatgatgatgaagatgagggagagaagaggaaatctccctcccctgtttttcat
gcagataccagtcagctaattctacttcaacggagacttggccttagaagaaaagaggaa
agactagcagaaaaacaaccacctgacttactggaggagagggaggaagacgagaaggaa
gaaaagatggatgataaagagggtggagagaagagggaggaggaagaagtggatgtcaga
ggcttacaagttccagagacccaactcagtgacgacagcactcaagacctcatggtcacc
agccctgcacagccccagccagagagccagtccctgcctcagatccagacctttctttca
tcaccccgtcctctggaacagcgtgaagaggggatgttggtggttggagaggaggagggg
cggaggagtagccctgtggggatccctgctgtaggagaggatgttcggatggaggaggat
atcccagagcctgccttccctcggagccccaacatggactgtcccatgtgcatgcgtctc
ttccccctgacggagattgagatgcacgctgcctactgtgacggtaccaccggtatcatg
gaggaggaaatggcagaggagagccactcgcagggtgatttccttttgcaggacatttca
gtcaaggctcgtaggaagaggaccagaaggggtgagaacattggagaggagcagcccagc
tcttctggctctggcaaggtggtacagggagagaagtgcttcctgtgtcagcaactattt
cctctcaagtaccatgagaagcatgtagaggactgcatcaagaacaaagagttctccaag
gctgcacccagagacggacagagtggagactttctgagtgctctggaccagacagagcat
atatattcagggactgctgaggccaaaccatgtgatactaccatcaataaccaacaaagt
ggcctgattgatgatctggacacagcagaatctgggggaagaggagacttcagcgcccca
ggtttcagagtgagcacctcgcccatccaatccttcacccctgtctcagaagccacagac
tgccttatcgacttctaa
DBGET
integrated database retrieval system
