KEGG   Oncorhynchus kisutch (coho salmon): 109873327
Entry
109873327         CDS       T09179                                 
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
  KO
K12811  ATP-dependent RNA helicase DDX46/PRP5 [EC:5.6.2.7]
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109873327 (ddx46)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:oki03041]
    109873327 (ddx46)
Enzymes [BR:oki01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     109873327 (ddx46)
Spliceosome [BR:oki03041]
 Complex A
  U2 snRNP components
   U2 related factors
    109873327 (ddx46)
 Complex B
    109873327 (ddx46)
SSDB
Motif
Pfam: DEAD Helicase_C KH_12 KH-I_KHDC4-BBP CdAMP_rec
Other DBs
NCBI-GeneID: 109873327
NCBI-ProteinID: XP_020320576
Ensembl: ENSOKIG00005038634
UniProt: A0A8C7JV24
LinkDB
Position
LG28:complement(46989326..47012796)
AA seq 1064 aa
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDGAASRNRDRDRNRRGERSRSRDRRR
SRSRDRKRPRRSRSREKRRSRSRDRNRRSRSRGRRSQSASPSKSRKTEETLSKSKEKDNP
EASAEKKKIKEEQEEVVEDQDFDQNKLEEEMRKRKERVEKWREDQRKKALGNIEEIKREI
EEMKQGKKWSLEDDDDDDEEGTAPEEEPEEGEEGKGPEEKEEKKEEEEEEEEEVTPMEQE
AEDELDTLDAYMEEVKEEVKKFNMGPQSKGNDKKGGVNVSKVVTVCKTKRGPNVHKKKGE
LMENDQDAMEYSSEEEEVDLATALTGYQTKQRKVLEPVDHQKIEYEPYRKDFYVEVPELA
KMSPEEVNVHRLDLEGIAVKGKGCPKPIKSWVQCGTSMKILSALKRHSYEKPTPIQAQAI
PAIMSGRDLIGIAKTGSGKTIAFLLPMYRHIMDQRPLEEAEGPIAVIMTPTRELALQITK
ECKKFSKPLNLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRA
TYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQV
GGRSVVCSDVEQHVLVIEEDQKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKAS
YPCMSLHGGIDQYDRDSVINDFKNGACRLMVATSVAARGLDIKQLILVVNYNCPNHYEDY
VHRAGRTGRAGNKGFAYTFITDEQARYAGDIIKALELSGSPVPKELEQLWLSFKNQRQAE
GKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDEQIESMFNS
KKRVKDLSAPGGGPPSAAAVAAAAAGGLANLGAPSAGNIQKLEMAKRLALRINAQKNLGA
EAQDVMQQATNAILRGGTIMAPSVSAKTIAEQLAEKINAKLNYIPVEKLEEERQAAEQAE
TVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIY
LAIESANELAVTKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq 3195 nt   +upstreamnt  +downstreamnt
atggggcgcgagtcaaggcattacaggaaacggtcggcatcgaggggtcggtccgggagt
cgatcaaagagccgttccccagacaaacgctccaagaaggatgatggggctgcctcacga
aaccgagacagggaccgcaacaggcggggagagcggtcacgcagccgtgaccgacgccga
tcaaggtccagagacaggaagcgccccagacgctctaggagtcgggagaagaggcgctcc
aggagccgtgacaggaatagaaggtctagaagccgaggacgcagatctcaatccgcaagc
cccagcaaaagcaggaaaactgaagagactctgtctaaaagcaaggaaaaagacaaccct
gaagcctctgcagagaagaagaaaatcaaagaagagcaagaggaggttgttgaggatcaa
gactttgaccagaacaagctggaggaagagatgaggaagaggaaggagcgagtggagaag
tggagggaggaccaaaggaaaaaggccctagggaacatcgaggagatcaagagagagatt
gaggagatgaagcagggaaagaagtggagtctggaggatgatgacgatgacgatgaggaa
gggacagctcccgaggaagagcctgaagaaggcgaggagggtaaggggccagaggagaag
gaggaaaagaaagaggaggaggaggaagaggaggaggaggttactcccatggagcaggaa
gcagaggatgagctggataccttagacgcctacatggaggaggtcaaggaggaagtcaag
aagttcaacatgggcccccagtctaaagggaacgacaagaagggaggagtaaatgtatcc
aaagttgtcaccgtatgcaaaactaagaggggaccaaatgtccacaaaaagaagggtgag
ctgatggagaatgaccaggatgcaatggagtactcatcagaggaagaggaagtggatctg
gcgacagccctgactggctaccagaccaaacagaggaaggtgctggagccagtggatcac
cagaagattgagtacgaaccgtaccgcaaggacttctatgtagaggtgccagagctggcc
aagatgtctccagaggaggtgaatgttcacaggctggacctggagggtatcgcagtcaaa
gggaaaggttgtcccaagcccatcaagtcatgggttcagtgtggcacgtctatgaagatc
ctaagtgcactgaagagacacagctatgagaagcccacccccatccaggctcaggccatt
ccagccatcatgtctgggagagatctcattggcattgctaagaccggcagtggaaagacc
atcgccttcctccttcccatgtaccgtcacatcatggaccagaggcccctggaggaggct
gagggacccatcgctgtgatcatgactcccactagagagctggctctgcagatcaccaag
gagtgcaagaagttctccaagcctctgaacctgagggtggtgtgtgtatatggaggcact
gggattagtgaacagattgctgagctgaagaggggagcagagatcattgtgtgcacacca
gggcgaatgattgacatgttaggtgccaacagcggtcgagtcacaaacctgcggcgagcc
acgtacgtggtcgtggacgaggcggatagaatgttcgacatgggctttgagccacaggtg
atgcgtatcatggacaacgtgcgtccagaccggcagacggtcatgttctccgctacgttc
ccgcgggccatggaggcactggccaggaggatactgtccaagcctatcgaggttcaggtg
ggaggcaggagcgtggtgtgctctgatgtggagcaacatgtgctggtaattgaggaggac
cagaagttcctgaagctgcttgagatccttggccattaccaggagaagggctcggtcatc
atctttgtggacaaacaggagcatgctgacgggctgctcaaagacctgatgaaggcctcc
tacccctgcatgtctctgcacggaggcattgaccagtacgacagagacagcgtcatcaat
gattttaagaacggggcgtgtcggctaatggtggccacctctgtggcagccagggggctg
gacatcaagcagttgatcctagtcgtcaactacaactgtcccaaccactacgaggactat
gtccacagggctggacgtaccgggagagccgggaacaaaggctttgcctacaccttcatc
acagatgagcaggcacgctacgccggggacatcatcaaggccctggagctctcagggtcc
cctgtgcccaaggagctggagcagctgtggctgtccttcaaaaaccagcggcaagcggag
ggtaaaagcatcaagagcagcagcgggttctcagggaagggcttcaagtttgacgagacg
gagcatgccctggctaacgagaggaagaagctgcagaaggccgctctgggtctgcaggac
tctgatgacgaggacggagccctggatattgacgagcagatcgagagcatgttcaactcc
aagaagagggtgaaggatctgtcggctccagggggagggccgcccagcgctgcggccgtt
gcggctgcagcagcagggggcctagccaacctcggtgccccctctgctgggaacatccag
aaactggagatggccaagagactggctctcaggatcaacgcccagaagaacttgggggct
gaggctcaggatgtgatgcaacaggccaccaatgccatcctgagaggaggcacaatcatg
gccccctccgtctcggcgaagaccatcgccgagcagctggctgagaagatcaacgccaag
ctcaactatatccctgtggagaagctggaggaggagaggcaggcagctgaacaggccgag
acagtcaagagatacgaagaggagctggaaatcaatgatttccctcagactgcgaggtgg
aaggtcacgtctaaagaggccctccagaggatcggagaatactctgaggcagccatcacc
atcagaggaacctacttccctccaggcaaagagcccaaagagggagaacgcaagatctac
ctggctattgagagtgcaaatgagctggccgttacgaaggccaaggctgagatcactcgg
ctcatcaaggaggagcttatcagattacaaaactcctaccaacccaccagcaaaggaaga
tacaaggtcttgtag

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