Oncorhynchus kisutch (coho salmon): 109873327
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Entry
109873327 CDS
T09179
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109873327 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109873327 (ddx46)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109873327 (ddx46)
Spliceosome [BR:
oki03041
]
Complex A
U2 snRNP components
U2 related factors
109873327 (ddx46)
Complex B
109873327 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
109873327
NCBI-ProteinID:
XP_020320576
Ensembl:
ENSOKIG00005038634
UniProt:
A0A8C7JV24
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All DBs
Position
LG28:complement(46989326..47012796)
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AA seq
1064 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDGAASRNRDRDRNRRGERSRSRDRRR
SRSRDRKRPRRSRSREKRRSRSRDRNRRSRSRGRRSQSASPSKSRKTEETLSKSKEKDNP
EASAEKKKIKEEQEEVVEDQDFDQNKLEEEMRKRKERVEKWREDQRKKALGNIEEIKREI
EEMKQGKKWSLEDDDDDDEEGTAPEEEPEEGEEGKGPEEKEEKKEEEEEEEEEVTPMEQE
AEDELDTLDAYMEEVKEEVKKFNMGPQSKGNDKKGGVNVSKVVTVCKTKRGPNVHKKKGE
LMENDQDAMEYSSEEEEVDLATALTGYQTKQRKVLEPVDHQKIEYEPYRKDFYVEVPELA
KMSPEEVNVHRLDLEGIAVKGKGCPKPIKSWVQCGTSMKILSALKRHSYEKPTPIQAQAI
PAIMSGRDLIGIAKTGSGKTIAFLLPMYRHIMDQRPLEEAEGPIAVIMTPTRELALQITK
ECKKFSKPLNLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRA
TYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQV
GGRSVVCSDVEQHVLVIEEDQKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKAS
YPCMSLHGGIDQYDRDSVINDFKNGACRLMVATSVAARGLDIKQLILVVNYNCPNHYEDY
VHRAGRTGRAGNKGFAYTFITDEQARYAGDIIKALELSGSPVPKELEQLWLSFKNQRQAE
GKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDEQIESMFNS
KKRVKDLSAPGGGPPSAAAVAAAAAGGLANLGAPSAGNIQKLEMAKRLALRINAQKNLGA
EAQDVMQQATNAILRGGTIMAPSVSAKTIAEQLAEKINAKLNYIPVEKLEEERQAAEQAE
TVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIY
LAIESANELAVTKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgagtcaaggcattacaggaaacggtcggcatcgaggggtcggtccgggagt
cgatcaaagagccgttccccagacaaacgctccaagaaggatgatggggctgcctcacga
aaccgagacagggaccgcaacaggcggggagagcggtcacgcagccgtgaccgacgccga
tcaaggtccagagacaggaagcgccccagacgctctaggagtcgggagaagaggcgctcc
aggagccgtgacaggaatagaaggtctagaagccgaggacgcagatctcaatccgcaagc
cccagcaaaagcaggaaaactgaagagactctgtctaaaagcaaggaaaaagacaaccct
gaagcctctgcagagaagaagaaaatcaaagaagagcaagaggaggttgttgaggatcaa
gactttgaccagaacaagctggaggaagagatgaggaagaggaaggagcgagtggagaag
tggagggaggaccaaaggaaaaaggccctagggaacatcgaggagatcaagagagagatt
gaggagatgaagcagggaaagaagtggagtctggaggatgatgacgatgacgatgaggaa
gggacagctcccgaggaagagcctgaagaaggcgaggagggtaaggggccagaggagaag
gaggaaaagaaagaggaggaggaggaagaggaggaggaggttactcccatggagcaggaa
gcagaggatgagctggataccttagacgcctacatggaggaggtcaaggaggaagtcaag
aagttcaacatgggcccccagtctaaagggaacgacaagaagggaggagtaaatgtatcc
aaagttgtcaccgtatgcaaaactaagaggggaccaaatgtccacaaaaagaagggtgag
ctgatggagaatgaccaggatgcaatggagtactcatcagaggaagaggaagtggatctg
gcgacagccctgactggctaccagaccaaacagaggaaggtgctggagccagtggatcac
cagaagattgagtacgaaccgtaccgcaaggacttctatgtagaggtgccagagctggcc
aagatgtctccagaggaggtgaatgttcacaggctggacctggagggtatcgcagtcaaa
gggaaaggttgtcccaagcccatcaagtcatgggttcagtgtggcacgtctatgaagatc
ctaagtgcactgaagagacacagctatgagaagcccacccccatccaggctcaggccatt
ccagccatcatgtctgggagagatctcattggcattgctaagaccggcagtggaaagacc
atcgccttcctccttcccatgtaccgtcacatcatggaccagaggcccctggaggaggct
gagggacccatcgctgtgatcatgactcccactagagagctggctctgcagatcaccaag
gagtgcaagaagttctccaagcctctgaacctgagggtggtgtgtgtatatggaggcact
gggattagtgaacagattgctgagctgaagaggggagcagagatcattgtgtgcacacca
gggcgaatgattgacatgttaggtgccaacagcggtcgagtcacaaacctgcggcgagcc
acgtacgtggtcgtggacgaggcggatagaatgttcgacatgggctttgagccacaggtg
atgcgtatcatggacaacgtgcgtccagaccggcagacggtcatgttctccgctacgttc
ccgcgggccatggaggcactggccaggaggatactgtccaagcctatcgaggttcaggtg
ggaggcaggagcgtggtgtgctctgatgtggagcaacatgtgctggtaattgaggaggac
cagaagttcctgaagctgcttgagatccttggccattaccaggagaagggctcggtcatc
atctttgtggacaaacaggagcatgctgacgggctgctcaaagacctgatgaaggcctcc
tacccctgcatgtctctgcacggaggcattgaccagtacgacagagacagcgtcatcaat
gattttaagaacggggcgtgtcggctaatggtggccacctctgtggcagccagggggctg
gacatcaagcagttgatcctagtcgtcaactacaactgtcccaaccactacgaggactat
gtccacagggctggacgtaccgggagagccgggaacaaaggctttgcctacaccttcatc
acagatgagcaggcacgctacgccggggacatcatcaaggccctggagctctcagggtcc
cctgtgcccaaggagctggagcagctgtggctgtccttcaaaaaccagcggcaagcggag
ggtaaaagcatcaagagcagcagcgggttctcagggaagggcttcaagtttgacgagacg
gagcatgccctggctaacgagaggaagaagctgcagaaggccgctctgggtctgcaggac
tctgatgacgaggacggagccctggatattgacgagcagatcgagagcatgttcaactcc
aagaagagggtgaaggatctgtcggctccagggggagggccgcccagcgctgcggccgtt
gcggctgcagcagcagggggcctagccaacctcggtgccccctctgctgggaacatccag
aaactggagatggccaagagactggctctcaggatcaacgcccagaagaacttgggggct
gaggctcaggatgtgatgcaacaggccaccaatgccatcctgagaggaggcacaatcatg
gccccctccgtctcggcgaagaccatcgccgagcagctggctgagaagatcaacgccaag
ctcaactatatccctgtggagaagctggaggaggagaggcaggcagctgaacaggccgag
acagtcaagagatacgaagaggagctggaaatcaatgatttccctcagactgcgaggtgg
aaggtcacgtctaaagaggccctccagaggatcggagaatactctgaggcagccatcacc
atcagaggaacctacttccctccaggcaaagagcccaaagagggagaacgcaagatctac
ctggctattgagagtgcaaatgagctggccgttacgaaggccaaggctgagatcactcgg
ctcatcaaggaggagcttatcagattacaaaactcctaccaacccaccagcaaaggaaga
tacaaggtcttgtag
DBGET
integrated database retrieval system