Oncorhynchus kisutch (coho salmon): 109873452
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Entry
109873452 CDS
T09179
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109873452 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oki03400
]
109873452 (lig3)
Enzymes [BR:
oki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109873452 (lig3)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
109873452 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
109873452
NCBI-ProteinID:
XP_020320692
Ensembl:
ENSOKIG00005027391
LinkDB
All DBs
Position
LG28:complement(34239075..34261608)
Genome browser
AA seq
1029 aa
AA seq
DB search
MQRFCISLALKTVDNIHFGKLCRCQPTWKLFVAYPLSANFQILPHCRGILPYPLDCHQCT
QPPWNRSLSLDSNFKVCWRHYCTNQTDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLTRIG
KIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKL
VGDLMAKANTSPKKKVQAKLNNSGQLSAPPADPSLNAPRKFSGFTATKAGSSSSPGPSPA
KPNQGSPLSAQLCDPKHKDSLLREFRKLCAMVADKNSYNVKTQIIHDFLKKGSGGDKFKG
DVYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETVRMFFEEG
KSFPPAAKSLLTIQEVDASLTRLAQLTKEDDQQKELEDISKKCTGNDLKCIIRLIKHDLK
MNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATNGSGPRKLLTIEASLMTPV
QPMLAEACKSIQYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFVGGNSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFEDAKVCLFVFDCIYFN
GVSLMEKPLYERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
LKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPNSK
KWCTVTKCSGGYDDAMLTRLQKELDMIKISKEPSKIPGWLKIIKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKSATNLMQLKELFRISKERCDFEVT
AGPSKGGEDDKGSSGDSGGNSPPSTSQRPVTPRKTSTGNSNTPKAKAVKTEPPSPVPATK
RKMPSEEPSAKKVKTETVHHSNGQSKNGQSKTKMAPSMLAEPRNDKTSCSPQTLLDIFSG
VKLVLPDSVQDHNKLRRYFVAYDGDLVPEYDAASATHTLTEPEEDSHAQRVTPGWIWECI
RKRRVVPPC
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgcagagattctgtatttcattggcacttaagactgtcgacaatatacattttgggaaa
ctgtgcaggtgtcaacccacctggaaactgtttgtcgcttatcccttatctgcaaacttc
caaattctaccccattgtaggggcatcctcccctatcccttggactgccatcagtgcacc
cagcccccttggaatcgcagtctttcactagattccaatttcaaggtttgctggcgtcac
tattgtactaaccagacagacatggctgaacagagatactgtgtggagtatgccaaacgt
ggcactgcgggatgtaagaagtgtaaggacaaaatcatgaagggcttgacccgcatcggg
aagattgtgcctaacccgttcagtgagtctgccggggagatgaaggagtggtaccatgtg
aagtgtatctttgagaagctggagcgggcccgggccaccactaagaagatcgaggacatc
acagacctggagggctgggaggagctgcaggatgaggacaaggagctcatcaacaaactt
gttggagacttgatggccaaagctaacacgagcccaaagaagaaggtgcaagccaagctg
aacaacagtggtcagctatcagctccgcctgctgacccttctctgaatgcaccacggaag
ttctctggcttcacagctactaaggctgggagctcaagcagcccaggcccatccccagcc
aaacccaaccagggcagtcctctttccgcacagctctgtgaccccaaacacaaggatagc
ctgctccgggagttccgcaagctctgtgccatggtggcagacaagaatagctacaatgtc
aagacacagatcattcacgacttcctgaagaaaggctcagggggagataaattcaaggga
gatgtgtacctgacggtgaagctgcttctcccaggggtggtgaagagtgtgtacaacctc
aacgacaaacagatagtcaagctcttcagccgcatcttcaactgcaaccaggaggagatg
gtgcgagatctggaacagggggatgtgtcggagacagtgaggatgttttttgaagaaggc
aagtctttcccaccggccgccaagagtctgctcacgattcaggaagtggatgcgtccctt
acccgtctggcccagttaaccaaggaggatgaccagcagaaagagctagaggacatatcc
aaaaaatgtaccggcaatgatctgaaatgtatcatcagactcattaagcatgatctaaag
atgaactctggagctaagcatgtcttggatgcagttgacccgaatgcctacgacgctttc
aaggcctcccgtaacctaggggacgtgatagagcgcgtgctgaggaaccagcaggatgcc
accaacggctcaggccccaggaagctcctcactattgaagcctccctcatgaccccagtg
cagcctatgctggctgaggcatgcaagtccatccagtacgccatgaagaagtgccccaac
ggcatgtactctgaaatcaagtatgacggcgagcgtgtccaggtccacaagaatggagac
cacttcagctacttcagccgcagccttaaacctgtgttgccacacaaggtggcccatttt
aaagagttcatccctcaggccttcgttggtggcaacagcatgatcctggatgccgaggtg
ctcctcatcgacaccaataccagcaagccactacccttcgggacactgggggtgcacaag
aaagcagcctttgaagacgccaaagtgtgcttgtttgtgttcgactgcatctatttcaac
ggcgtgagcctgatggagaagcccctgtacgaacgaaggaagttcctccatgacaacatg
gtggaggttcccaacaggatcctgttctccgagatgaagcacgtcactagggcggctgac
ctggccgagatgatcacacgcgtcatcagagagggactggaggggctggtcctcaaagac
ctcaagggcacctatgagccagggaagcgccactggctgaaggtaaaaaaggactacctg
aacgagggagcaatggccgacacagcagacctggtggtgctgggagccttctatggcaaa
ggctcaaacggcgggataatgtccagtttcttaatgggctgctatgacccgaactctaag
aagtggtgcaccgtgaccaagtgctccggaggctacgatgacgccatgttgacccgactc
cagaaggagctggacatgatcaaaatcagcaaggaacccagtaaaatccctggctggttg
aaaatcatcaagaactattaccctgattttattatccgcgatcctgagaaagcgccggtg
tgggagatcacgggggcggagttctccaagtcggagatgcacaccgccgacggcatatcc
atccgcttcccccgcatgacgcgtgtccgtgacgacaaggactggaagagcgccaccaac
ctgatgcagctcaaagagctcttccgcatctccaaggagaggtgtgactttgaggtgaca
gcagggccctccaaaggaggtgaggatgacaagggctcttcaggagacagtgggggcaac
tctccaccctccacctcccagagaccagtcactcccagaaagaccagcacaggcaacagc
aatacccccaaagctaaggcagtaaagacagagcctccctcccctgttccagcaaccaag
aggaaaatgccctcagaagagcccagcgcaaagaaggtaaagacggaaactgtccatcac
agtaatggacaaagcaagaatggacaaagcaagactaaaatggccccctccatgttggca
gaacccaggaatgacaagacttcctgctctccccagactctactggacattttcagtggt
gtgaagctcgtcctgccagactctgtgcaggaccacaacaagctgcggcgctactttgtg
gcctacgacggggacctagtgccggagtatgacgccgcttcggccacacacaccctgact
gagcccgaggaggacagccatgcccagagggtcacccccggctggatctgggagtgtatc
cgcaagagacgggtggtgcctccctgctga
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