Oncorhynchus kisutch (coho salmon): 109873691
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Entry
109873691 CDS
T09179
Name
(RefSeq) high mobility group-T protein isoform X1
KO
K10802
high mobility group protein B1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03410
Base excision repair
oki04140
Autophagy - animal
oki04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
109873691
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109873691
09143 Cell growth and death
04217 Necroptosis
109873691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oki03036
]
109873691
03400 DNA repair and recombination proteins [BR:
oki03400
]
109873691
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109873691
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
109873691
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
109873691
MMR (mismatch excision repair)
Other MMR factors
109873691
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
109873691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HTH_Tnp_Tc3_2
HTH_32
NOA36
HMG_box_5
Sigma70_r4
HTH_28
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
109873691
NCBI-ProteinID:
XP_020320945
Ensembl:
ENSOKIG00005042796
UniProt:
A0A8C7KHK2
LinkDB
All DBs
Position
LG29:complement(37281816..37287965)
Genome browser
AA seq
345 aa
AA seq
DB search
MRRKELSEEFRDKVVDRHRLGEGYKKISHTLSIPLGTVRSIIKKWKVYGTTETLPRSGRP
SKISSWAKRILALELTMRPTASLKELQSSMAEMGENVHESTIARSFANCSRYGRSERRRT
LQKANSDLQSRAEFAEKHLDIEMGKDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFS
EFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPS
SAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDI
TAYRNKGKVPVSMPAKAAAPAKDDDDDDDDDDDEDDDDDDDEDDE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcaaagagctttcagaagagttcagggataaagttgtagatcggcacagatta
ggggaaggttataagaaaatttcccatacattgagtatcccattgggtacagtcaggtca
atcattaagaagtggaaggtgtatggcaccactgagactctgcccagatcaggacggcct
tccaaaataagcagttgggcgaaaaggattcttgctctggaactcaccatgagaccaact
gcctcgttgaaagagctgcagagttccatggctgagatgggagaaaatgtccatgaatca
actatagctcgatcattcgccaactgtagccggtatggccgatcggaaagaaggagaaca
ttacagaaagcaaacagcgatctccaatcacgtgcagagtttgcagaaaagcatttagat
attgagatggggaaagatccaaggaagccgaggggcaagatgtcctcctatgcctacttt
gtccagacctgtcgggaggagcacaagaagaaacacccagaagcttccgtcaacttctca
gagttctccaagaagtgctctgagagatggaagaccatgtccgccaaggagaaggggaag
tttgaggatctggccaaactggacaaggtgcgatatgagagggagatgaggagctacatt
cctcccaagggagagaagaagaagaggttcaaggaccccaacgcccccaagagaccatcg
tctgcgttcttcatcttctgcgctgacttcagaccccaggtgaagggggagaccccgggc
ctgtctatcggtgatgtggccaagaagctgggagagaagtggaacaacctaacagcggag
gacaaggtaccctatgagaagaaggcttccaagctgaaggagaagtacgagaaggacatc
actgcgtaccgcaacaagggtaaggtgccggtcagcatgccagcgaaggccgccgcaccc
gccaaggacgacgacgacgatgatgacgacgacgatgatgaggatgacgatgatgacgat
gatgaggatgacgagtag
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integrated database retrieval system
