Oncorhynchus kisutch (coho salmon): 109873932
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Entry
109873932 CDS
T09179
Symbol
ddx52
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oki03009
]
109873932 (ddx52)
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109873932 (ddx52)
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
90S particles
Helicases
109873932 (ddx52)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
SecA_DEAD
XdhC_C
Motif
Other DBs
NCBI-GeneID:
109873932
NCBI-ProteinID:
XP_031665435
Ensembl:
ENSOKIG00005027838
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All DBs
Position
LG29:complement(41310526..41332289)
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AA seq
573 aa
AA seq
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MDAFDLFRKLGAGAKFDFKRFGKDAERFKVVRSQEKDVSDHYGIDFFGTGTTHGNQEQRA
EEKQDEEVEVDAAAGKRKRPDEEKTAKKKKKDTQAEVACEETEGILWTSSADRKSKGLKE
GRDRDKTSMKRLQHLHQEKVNRVRMQHRINVHGCDVPDPVCTFSELQSEYDLNPRVLQNL
SAAGLTIPTPIQMQAIPLMMHGRELLACAPTGSGKTLAFCLPLLTHLKQPANLGIRALVI
SPTRELASQTHRELVRLSEGVGFRVHILDKASMAARKHVPSSHKKSDILISTPNRLVFLL
KQDAIDLSSVEWLVVDESDKLFEDGRSGFREQLAAVFQACSSPRVRRALYSATCAPDVEQ
WCRLNLDNLVSVNIGHRNSAVETVEQELLFVGTENGKLLAVRDIIKKGFLPPMLVFVQSI
DRARELFHELVYEGINVDIIHADRTQQQRDNVISSFRSGDIWVLICTALLARGIDFKGVN
LVLNYDFPTSAVEYIHRIGRTGRAGRTGRAVTFFTEDDKPLLRSIANVIKQAGCPVPGYM
VGFKKIHSKVKRQLQKKPPKRSTIRTTPQFVLK
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggacgccttcgacttgtttcgtaaactcggagccggagcgaaatttgatttcaagagg
tttggtaaagatgccgaacgatttaaggtggtgagatctcaagagaaagatgtatctgac
cactatgggatcgactttttcgggaccggaacaacccacggcaaccaggagcagagagcg
gaggagaagcaagacgaggaggtagaggtagatgctgctgcagggaaaaggaaacgaccg
gatgaggagaagactgcaaagaagaaaaagaaagatactcaggctgaagtggcgtgtgag
gagaccgagggcatcctgtggacctcctctgcagacaggaagtctaaaggcttgaaggag
gggagggacagagacaagacatccatgaagagactccaacacctccaccaagagaaggtg
aaccgtgtccgcatgcagcatcgtatcaacgtgcatggctgtgacgtgcctgacccagtg
tgcaccttctccgagctgcagtccgagtacgacctgaacccgcgcgtcctccagaacctg
tcagcagctggactcaccatacccacgcccatccagatgcaggctatacccctgatgatg
catggtcgtgagttgttggcgtgtgctccgacaggttcggggaagactctagcgttctgt
ctccctctcctgacacacctgaaacagcctgctaacctcggcatcagagctctggtcatc
tctcccaccagggaactggccagccagacccacagggagttggtgcgtctgtcggagggc
gtcgggttcagagttcacatactagacaaggcctccatggcagccaggaaacacgttccc
agctctcacaagaaatccgatattctgatcagtacccccaatagactggtgttcctcctg
aagcaggatgctatagacctcagcagtgtggaatggttggtggtggatgagagcgataag
ctgtttgaggatggacgtagtggcttcagagagcagctagcagcagtgttccaggcgtgt
tcctctccgcgggtcagacgagcgctctacagtgctacctgtgctccagacgtggaacag
tggtgtcgcctcaacctcgacaacctggtctctgtcaacattggacacaggaactctgca
gtagagacagtagaacaggagctgctgtttgttggaacagagaacgggaagttactggcc
gtgagggacatcatcaagaagggtttcttgccccctatgctggtgtttgtccagtctatt
gatcgagccagagagctcttccatgagctggtgtacgaaggcatcaacgtagacatcata
cacgctgaccgcacacagcaacagagagacaacgtgatcagtagtttccggtcgggtgat
atatgggtgttgatctgtacggccctgctggcccgaggtatcgactttaagggtgtcaac
ctggtgctgaactacgacttccctaccagcgctgtggaatacatccaccgtatcggtcgt
actggcagggcgggacgcacagggagagctgtcaccttcttcacagaggatgacaagcct
cttctacgcagtattgccaatgtgatcaaacaggccggttgtcctgtccctggctacatg
gtaggctttaaaaagatacacagtaaggtaaaacggcagctccagaagaaaccgccgaag
aggagcactatccgtaccacgcctcaatttgtactgaag
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