KEGG   Oncorhynchus kisutch (coho salmon): 109874122
Entry
109874122         CDS       T09179                                 
Name
(RefSeq) small nuclear ribonucleoprotein Sm D3-like
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109874122
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109874122
   03041 Spliceosome [BR:oki03041]
    109874122
   03032 DNA replication proteins [BR:oki03032]
    109874122
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     109874122
Spliceosome [BR:oki03041]
 Complex A
  U1 snRNP components
   Sm proteins
    109874122
  U2 snRNP components
    109874122
 Complex B
  U1 snRNP components
    109874122
  U4/U6.U5 tri-snRNP components
    109874122
 Complex C
  U2 snRNP components
    109874122
DNA replication proteins [BR:oki03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     109874122
SSDB
Motif
Pfam: LSM Kringle ATP-grasp_2 TSP9
Other DBs
NCBI-GeneID: 109874122
NCBI-ProteinID: XP_020321500
Ensembl: ENSOKIG00005050837
LinkDB
Position
LG29:complement(15935716..15938977)
AA seq 128 aa
MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQ
VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGGGMGR
GTIFPKRR
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtccattggcgtgcccatcaaagttctgcatgaagcagagggccacattgtgacctgt
gagaccaacactggtgaagtgtacaggggcaagctcattgaggctgaggacaacatgaac
tgccagatgtccaatatcactgtgacgcatcgtgatggccgtgtagcccaattggagcag
gtctatatccggggcagcaagattcgcttcctgatcctaccggacatgttaaaaaacgcc
cctatgttaaagagcatgaaaaacaagaaccagggatctggagcaggaagggggaaggca
gccattctcaaagctcaggtggctgcaagaggacggggtcgtggtggagggatgggaaga
ggaaccattttcccgaaaaggcggtag

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