KEGG   Oncorhynchus kisutch (coho salmon): 109874124
Entry
109874124         CDS       T09179                                 
Name
(RefSeq) nuclear RNA export factor 1
  KO
K14284  nuclear RNA export factor
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03008  Ribosome biogenesis in eukaryotes
oki03013  Nucleocytoplasmic transport
oki03015  mRNA surveillance pathway
oki05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109874124
   03015 mRNA surveillance pathway
    109874124
   03008 Ribosome biogenesis in eukaryotes
    109874124
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109874124
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109874124
   03009 Ribosome biogenesis [BR:oki03009]
    109874124
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     109874124
   mRNA cycle factors
    Stress granule specific factors
     109874124
Ribosome biogenesis [BR:oki03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    109874124
SSDB
Motif
Pfam: LRR_NXF1-5 NXF_NTF2 Tap-RNA_bind TAP_C NTF2 UBA_8 LRR_8 LRR_4 LRR_9
Other DBs
NCBI-GeneID: 109874124
NCBI-ProteinID: XP_020321504
Ensembl: ENSOKIG00005040338
UniProt: A0A8C7JUA5
LinkDB
Position
LG29:complement(32962471..32983195)
AA seq 629 aa
MSTADDSRYNDHDDRVGGQKVRNRKGRGPFRAPMYSDQGPRPRHRGSQRGGGGPGPRARF
DDEDGDVAMADSNSQDGSSQHRFNPYGRPNRRGDDRFDRGRRGGGGGGHRGRGNNKGGDG
GGGGRKNWFKMSVPYGKKYDKDWLITALQNICSMPFTPVHYHVEGNRAEFFIDDSTTANA
LFKVSRKITDKEGYKVTVLMNPCPPPSFLQSELKPADLEHLKQCMAKRFDGSQQALDLNN
IRIDPDLVSQNIDVTLNRKNSMRAVIKIIEENIPELVCLNLSNNKLFRLDDLSELVNKVP
NLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDQASYISEVRERFPRLLKL
DGQDLPPPIVFDVEVTPAALPPCKPSYFCSEEIKTPIVGFLQQYYSVYDSGDRQPLLDAY
HDGATFSLSMPFTMQNPSRCSLGDYHKDSRNLKKLKDPTTRFRLLKHTRLNVVAFLSELP
KTQHDTASLIVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFCRVFVTVPAGGTSLCIV
NDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLSAFSLKSGMNLEWSQKCLQ
DNEWDFNRAGQVFTDLKAHGKIPDVAFIK
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgtcaacagccgacgattcacgttacaacgatcacgatgaccgagttggaggacaaaag
gttcgcaaccgtaaaggcagagggcctttcagggcccctatgtatagtgaccaggggcca
agaccaagacatcgtggtagccaaagaggtggcggcggcccgggacccagagcgagattc
gacgatgaggatggagatgtggcaatggcggacagcaactcccaagatggatcctcccaa
cacagatttaacccttatggaaggccaaatcggcgtggtgacgaccgatttgaccggggc
cgcagaggtggtggtggaggaggtcacaggggtcgtgggaataacaaaggaggggatgga
ggtggaggtggccgcaagaactggttcaagatgtctgtcccctatggaaagaaatacgac
aaagactggctgataacagcactgcagaatatctgctccatgcccttcaccccagtacat
taccacgtagagggaaaccgagcagagttctttattgatgattccacgactgcgaatgcc
ttgtttaaggtatcacggaagatcacagacaaagagggctacaaggtgactgtactgatg
aatccctgtcctccaccctcctttcttcagtctgaactaaagccagctgatctggagcac
ctgaagcaatgcatggctaaacgttttgatggctctcaacaagcgctggacttgaacaac
atccggatagacccagacctggtgtcccagaacattgatgtgactttgaacagaaagaac
tccatgcgtgctgttattaagataattgaggagaatattccagagcttgtttgtctgaac
cttagcaacaacaagctatttaggctggatgacctgtcagagctggtcaacaaggttccc
aacctgaagacactcaacctttctcataacgagttaaagacagagcgcgagctggacagg
atcaagggtcttaagctggtggagttatggctggagaggaaccccctttgtgactatttc
aaggaccaggcttcatacatcagcgaggtgagagagaggttccccaggcttctcaaactg
gacggtcaggatctccccccgcccatagtctttgatgtggaggtgactcctgccgccctt
ccaccttgcaagcccagctacttctgctctgaagagatcaagactcccatcgttggcttc
ctacaacaatactacagtgtgtatgactccggagacagacagcctttgttagatgcctac
cacgatggagcaaccttctccttgagcatgcccttcaccatgcagaacccctccaggtgc
agtcttggagattaccataaagacagtcgcaacctgaaaaagctcaaggatcccaccaca
cgattccgcttactgaagcacactcgtctgaatgtggtggctttcctgagcgaactgccc
aaaacgcagcatgacactgcatctctaattgtggacgtcaacaccttcaccaacacatta
ctgtcgttcacggtcactggagtgttcaaagaagttgaaggtaaatcccgtgactctgtg
agagctttctgtcgggtgtttgtcacagtgccagctggagggacaagtctttgcatagtg
aatgacgagctgtttgtgcgcaatgctacgactgaggagatccgccgggcctttgtggca
cctgcccccaccccatccagcagtcctgtccccaccctctcagccccccagcaagagatg
ctctctgccttctcactcaagtccggcatgaatcttgaatggtcccagaagtgcttacag
gacaatgagtgggatttcaaccgagcagggcaggtcttcacagacctcaaggctcatgga
aagatcccagatgtcgctttcataaagtga

DBGET integrated database retrieval system