Oncorhynchus kisutch (coho salmon): 109874124
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Entry
109874124 CDS
T09179
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03008
Ribosome biogenesis in eukaryotes
oki03013
Nucleocytoplasmic transport
oki03015
mRNA surveillance pathway
oki05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109874124
03015 mRNA surveillance pathway
109874124
03008 Ribosome biogenesis in eukaryotes
109874124
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
109874124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109874124
03009 Ribosome biogenesis [BR:
oki03009
]
109874124
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
109874124
mRNA cycle factors
Stress granule specific factors
109874124
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
109874124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_9
Motif
Other DBs
NCBI-GeneID:
109874124
NCBI-ProteinID:
XP_020321504
Ensembl:
ENSOKIG00005040338
UniProt:
A0A8C7JUA5
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All DBs
Position
LG29:complement(32962471..32983195)
Genome browser
AA seq
629 aa
AA seq
DB search
MSTADDSRYNDHDDRVGGQKVRNRKGRGPFRAPMYSDQGPRPRHRGSQRGGGGPGPRARF
DDEDGDVAMADSNSQDGSSQHRFNPYGRPNRRGDDRFDRGRRGGGGGGHRGRGNNKGGDG
GGGGRKNWFKMSVPYGKKYDKDWLITALQNICSMPFTPVHYHVEGNRAEFFIDDSTTANA
LFKVSRKITDKEGYKVTVLMNPCPPPSFLQSELKPADLEHLKQCMAKRFDGSQQALDLNN
IRIDPDLVSQNIDVTLNRKNSMRAVIKIIEENIPELVCLNLSNNKLFRLDDLSELVNKVP
NLKTLNLSHNELKTERELDRIKGLKLVELWLERNPLCDYFKDQASYISEVRERFPRLLKL
DGQDLPPPIVFDVEVTPAALPPCKPSYFCSEEIKTPIVGFLQQYYSVYDSGDRQPLLDAY
HDGATFSLSMPFTMQNPSRCSLGDYHKDSRNLKKLKDPTTRFRLLKHTRLNVVAFLSELP
KTQHDTASLIVDVNTFTNTLLSFTVTGVFKEVEGKSRDSVRAFCRVFVTVPAGGTSLCIV
NDELFVRNATTEEIRRAFVAPAPTPSSSPVPTLSAPQQEMLSAFSLKSGMNLEWSQKCLQ
DNEWDFNRAGQVFTDLKAHGKIPDVAFIK
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagccgacgattcacgttacaacgatcacgatgaccgagttggaggacaaaag
gttcgcaaccgtaaaggcagagggcctttcagggcccctatgtatagtgaccaggggcca
agaccaagacatcgtggtagccaaagaggtggcggcggcccgggacccagagcgagattc
gacgatgaggatggagatgtggcaatggcggacagcaactcccaagatggatcctcccaa
cacagatttaacccttatggaaggccaaatcggcgtggtgacgaccgatttgaccggggc
cgcagaggtggtggtggaggaggtcacaggggtcgtgggaataacaaaggaggggatgga
ggtggaggtggccgcaagaactggttcaagatgtctgtcccctatggaaagaaatacgac
aaagactggctgataacagcactgcagaatatctgctccatgcccttcaccccagtacat
taccacgtagagggaaaccgagcagagttctttattgatgattccacgactgcgaatgcc
ttgtttaaggtatcacggaagatcacagacaaagagggctacaaggtgactgtactgatg
aatccctgtcctccaccctcctttcttcagtctgaactaaagccagctgatctggagcac
ctgaagcaatgcatggctaaacgttttgatggctctcaacaagcgctggacttgaacaac
atccggatagacccagacctggtgtcccagaacattgatgtgactttgaacagaaagaac
tccatgcgtgctgttattaagataattgaggagaatattccagagcttgtttgtctgaac
cttagcaacaacaagctatttaggctggatgacctgtcagagctggtcaacaaggttccc
aacctgaagacactcaacctttctcataacgagttaaagacagagcgcgagctggacagg
atcaagggtcttaagctggtggagttatggctggagaggaaccccctttgtgactatttc
aaggaccaggcttcatacatcagcgaggtgagagagaggttccccaggcttctcaaactg
gacggtcaggatctccccccgcccatagtctttgatgtggaggtgactcctgccgccctt
ccaccttgcaagcccagctacttctgctctgaagagatcaagactcccatcgttggcttc
ctacaacaatactacagtgtgtatgactccggagacagacagcctttgttagatgcctac
cacgatggagcaaccttctccttgagcatgcccttcaccatgcagaacccctccaggtgc
agtcttggagattaccataaagacagtcgcaacctgaaaaagctcaaggatcccaccaca
cgattccgcttactgaagcacactcgtctgaatgtggtggctttcctgagcgaactgccc
aaaacgcagcatgacactgcatctctaattgtggacgtcaacaccttcaccaacacatta
ctgtcgttcacggtcactggagtgttcaaagaagttgaaggtaaatcccgtgactctgtg
agagctttctgtcgggtgtttgtcacagtgccagctggagggacaagtctttgcatagtg
aatgacgagctgtttgtgcgcaatgctacgactgaggagatccgccgggcctttgtggca
cctgcccccaccccatccagcagtcctgtccccaccctctcagccccccagcaagagatg
ctctctgccttctcactcaagtccggcatgaatcttgaatggtcccagaagtgcttacag
gacaatgagtgggatttcaaccgagcagggcaggtcttcacagacctcaaggctcatgga
aagatcccagatgtcgctttcataaagtga
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