Oncorhynchus kisutch (coho salmon): 109874281
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Entry
109874281 CDS
T09179
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109874281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109874281
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109874281
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
109874281
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
EXOSC1
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
109874281
NCBI-ProteinID:
XP_020321719
Ensembl:
ENSOKIG00005029559
LinkDB
All DBs
Position
LG29:complement(19709057..19715832)
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AA seq
306 aa
AA seq
DB search
MRRLNLQKTENMAADMRLPTFRKQVSLSPSLSALDGKDLVVPGDVITSDTGFMRGHGTYM
DEEKLTASVAGEVERVNKLVCVRPLRTRFNGEVGDVVVGRITEVQQKRWKVETNSRLDSV
LLLSSVNLPGGELRRRSAEDELTMRDYLQEGDLISAEVQSVFSDGALSLHTRSLKYGKLG
QGVLVQLSPSLIKRQKTHFHNLPCGASIILGNNGFVWLYPAPGQQDEEAGGYYTSLEPVS
LSDREVISRLRNCLLALGAHKVLLYDTSVLYCYESSLPHQIKDILKPEVMEEIVMVTRQK
LVEQEG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgtttaaatttacagaagacagaaaacatggctgcggacatgagattaccaact
tttcggaaacaagtatcgttatcaccctctctgtctgctttggatgggaaagatctagtt
gtgcccggtgatgtgattacatcagatacagggttcatgaggggtcatgggacttacatg
gatgaagaaaaactaacagcctctgtggcaggagaggtggagagggtgaataagctcgtc
tgtgtacggccgctcaggaccaggttcaatggggaggttggagatgtggtggtcggaagg
atcacagaggtgcaacagaagcgctggaaggtggagaccaactccagactggactctgtg
ttgttgctgtcttctgtcaatctgcccggaggagagctgaggagacggtcagcagaagat
gagctcaccatgagagactaccttcaggagggggacctcatcagtgcagaggtacagtct
gttttctcggatggagcactctctcttcacacccgcagtttaaagtacggaaagctgggg
caaggagttcttgtgcagctatctccctctctcatcaagagacagaaaacccacttccac
aacctgccgtgtggggcctccatcatcctgggcaacaatggctttgtgtggctgtacccc
gccccaggacagcaggacgaggaggctggaggatactacaccagtctggagccggtctcg
ctctctgatcgggaggtgatctcgcggttgaggaactgcttgctggccttgggggcacac
aaggtgcttctgtatgacaccagtgtgctctactgttacgagtcatcactcccacaccag
atcaaggatatcttaaaaccggaggtgatggaggagattgtgatggtgacgcgtcagaaa
ctggtggaacaggagggttag
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integrated database retrieval system
