Oncorhynchus kisutch (coho salmon): 109874678
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Entry
109874678 CDS
T09179
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E-like isoform X1
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04010
MAPK signaling pathway
oki04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
109874678
04020 Calcium signaling pathway
109874678
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
oki04040
]
109874678
Ion channels [BR:
oki04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
109874678
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
109874678
NCBI-ProteinID:
XP_020322294
LinkDB
All DBs
Position
LG30:complement(27593800..27663085)
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AA seq
2282 aa
AA seq
DB search
MHSIVMARFGDEVQMTMDSRDSGDPERGEDGGDTASGTGSGTLKQTKAARARTMALYNPI
PHRQNCLTVNRSLFIFAEDNLIRKTAKRIIEWPPFEWVILATITANCIVLALEQHLPGED
KTPMAKRLECTEPYFIGIFCFEFGIKLVALGFVFHKGSYLRNGWNIMDFIVVVSGILATA
GAHMNIPVDLRTLRAVRVLRPLKLVSGIPSLQIVLKSIMKAMVPLLQIGLLLFFAILMFA
IIGLEFYSGKLHHTCLPTADILENETMDTTEVEFACGVRKCPEKYDCVGSWIGPNDGITQ
FDNILFAVLTVFQCITMEGWTAVLYNTNDALGFMWNWIYFIPLIIIGSFFVLNLVLGVLS
GEFAKERERVENRRAFMKLRRQQQVERELNGYRAWIDRAEEVMLAEENKKSGRSALDVLK
RATSKNAKRRGGPGDAEISTIGAPRMRIRTVRRGPVAYMRRKERMLRISLRRMVKTDTFY
WTVLSLVFLNTICVAIVHHNQPDWLSTFLYYAEFVFLGLFLAEMFLKMYGLGFRLYFHSS
FNCFDCGVIVGSIFEVVWGFFRPGMSFGISVLRALRLLRIFKITKYWASLRNLVVSLMSS
MKSIISLLFLLFLFIVVFALLGMQLFGGRFIFEDYTPTNFDTFPAAIMTVFQILTGEDWN
EVMYNGIRSQGGVQYGMWSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEEE
EFFNARYARGTDGPMSEYRRRRRPYLRRKKAIHRGRMAVPEEEEESTAGGGVDQPPNGTN
AFSNRRDRRRRGGGGGRGGRSVWEQRANQLRKRRQMESQEVLFGGSPTEDTTDTPTTAYR
APTLSPDASPGHLPESPMSGIMPMPEPPMSIAIPLPEPPDSEPVPLFTLAEERAVNHRPT
GGERRHRVARKSRPGPGGAEEGGTARHRRHRHREARAEAKSRESPHEEVSESGSRERKIL
EEREEKEEKDEKEVKGEFAEVEGGVSGKDEGGALIINPESEEEHLRVCIADIPEPPLCDN
FPEYLPPPLLEPPPQMEEGEVGETGQCEPLSQDPPVEPAPEQFADPSELQAAAGVSDSEN
NQASLNLEEAKESEQGPDSQTSVIIEMSGAQPLLEVTPMTALHSSKEVEMYHHERKEKKE
EESQVEKEEEEEASPPKPVPPGSMFLFKASNPIRRICHYVVTMRYFEMTILLVIVASSIA
LAAEDPVCTNSDRNRVLRYFDYVFTGVFTFEMIIKMTDLGLLLHDGSYFRDLWNILDFIV
VVGALIAFALTNVIGNNKGRDIKTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVVTSLKNV
FNILIVYQLFMFIFAVIAVQLFKGKFFYCTDSSMDTEKECQGYYIDYARDKKEVKKREWK
RHEFHYDNVCWALLTLFTVSTGEGWPQVLQHSVDVTEEDMGPSRGNRMEMSIFYVVYFVV
FPFFFVNIFVALIIITFQEQGDKMMEECSLEKNERACIDFTISAKPLTRYMPQNRQTFQY
RLWHFVASPSFEYTVMVMIALNTVVLMMKYYSAPAAYDTVLKHLNTAFTVLFSLECILKI
MAFGFVNYFRDTWNIFDFITVLGSITEIIVDLQSINTFNMSFLKLFRAARLIKLLRQGYT
IRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIKLNDENHINQHNNFKTFSGA
LMLLFRSATGESWQEIMLSCLGGQECEPDSSMAPMTMSPDHEGGCGTDFAYCYFVSFIFF
SSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFVRVWGEYDRAACGRIHYTAMYEMLT
HMSPPLGLGKKCPRGMAYKRLVLMNMPVDEDMSVHFTSTLMSLIRTALEIKIARGQGMSG
EDRVALDTELQKEISVIWPYLPQKTLDVLVPINKDSDMTVGKIYASMMIMDYFKQNKAKK
LRAQLEAQKASLMPFQRLDASTLSEDILSNAQPLPCMPHSAGSALTRGGLVALSPLSPQD
LLNMQPMTSDTDTRSQHSRTEMASGSMKRSSSAVADQRVNGLRQEEKKSPDRLYRPRHKS
YKAAVSRSERKRQLDTEKERGRSKERRHLLSPDTSRCTSEERSLQPSRSPSRERTHPLDK
QGNSSDSPLPTSESSTPSRRPLSQTSTRSHPHISYSPLVCRTHPPSGDDDDDRGSPETQR
RGEASRDRAGGEGQSGARGRRHQQGSPLRRYPSEPYLALQEDEHSLDPTGFMETLTFEAA
VATSLGRANTVSSTSSSSFSSARRGSRSSWQVPNGHFRKRLAQTVSVAGCEPLSDTEEDD
RC
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atgcattctatagtaatggctcggtttggagatgaggttcagatgacgatggattcccga
gactccggggacccggagcgcggggaggacggcggggacacggcttcaggtacagggtca
gggacgctaaaacaaaccaaagcggcgagggcgcgcaccatggctctctacaaccctata
ccccaccggcagaactgcctcactgtcaacaggtcgctcttcatattcgccgaggacaat
ttaattcggaaaaccgccaagaggatcatagaatggccaccgtttgagtgggtaatcctg
gcgaccatcacggccaactgcatcgtcctggccctggagcaacatcttcctggggaggac
aagacccccatggccaaaagactggagtgtactgagccttacttcattgggatcttctgt
tttgagtttggcatcaagcttgtggccctgggctttgtgttccataaaggctcctacctg
aggaatggatggaatatcatggacttcatcgtggtggtcagcggaatcctggctacagca
ggggcccacatgaacatccccgtggacctgcggactctgagggcggtgcgagtcctgagg
cctctcaaactggtctctgggatccctagcttgcagatcgtgctgaagtccatcatgaag
gccatggtgcctctgctccagatcggcctgctcttgttcttcgccattctcatgttcgcc
atcatcggcctggagttctacagcgggaagctccaccacacctgtctacctacagctgac
atcctggaaaatgagacgatggatacgactgaggtggagtttgcgtgcggagtgaggaaa
tgtccagagaagtacgactgtgttgggtcatggatcggccccaacgacggcatcacccag
tttgacaacatcctgttcgctgtgctcactgtcttccagtgcatcaccatggagggatgg
acagctgtgctctacaataccaacgatgccttgggctttatgtggaattggatctacttt
attcctctcatcatcatcggctctttcttcgtactcaacctggtgttgggagtcctctcc
ggggagtttgccaaagagagggagcgggtggagaaccgtagagccttcatgaagctgaga
cgccaacagcaggtagagagagaactcaacggatacagagcctggatagaccgagcagag
gaggttatgctggctgaggagaacaagaagtcggggagatctgctttagatgtgctgaag
cgggccaccagtaaaaatgcaaagcgtagaggaggtcctggggatgcggagatctccact
ataggagcacctcgtatgcggatccgtacagtgcggcgtggcccggtggcgtacatgcgt
cgtaaggagcgtatgctgcgtatctccctgcggcgcatggtgaagacagacaccttctac
tggactgtcctcagcctggtgtttctcaacaccatatgtgtggccattgtccaccataac
cagccagactggctctccaccttcctgtactatgcagagtttgttttcctggggctcttt
ttggcagagatgttcttaaagatgtacggcctgggattccgcctctatttccactcctca
ttcaactgcttcgactgcggagtgatagttggcagcatctttgaggtggtgtggggcttc
ttccggcctggcatgtcctttggcatcagcgtcctgagggcactgagactcctgaggatc
tttaagatcaccaagtactgggcatcactgaggaacctggtggtgtctctcatgagttcc
atgaagtccatcattagtctgctctttctcctcttcctcttcattgttgttttcgccctg
ctgggcatgcagctctttgggggcaggttcatctttgaagattacactcctaccaacttt
gacacgtttccagctgccatcatgacagtgttccagatcctgactggtgaggactggaat
gaggtgatgtacaatgggatccgctcacaaggaggagtgcagtacggaatgtggtcctcc
atatacttcatagtgctcaccctgtttgggaactatacactgctcaacgtcttcttggcc
atcgctgtggataaccttgccaatgcacaggaactcaccaaggacgaagaggaggaagag
gagtttttcaatgcaagatacgccagaggcacagatggcccgatgtctgagtacaggagg
aggaggcggccctacctccgcaggaagaaggccatccacaggggccgtatggccgtcccc
gaggaggaggaggagagcactgctgggggcggagtcgaccaaccccccaatggcaccaat
gccttctccaaccgccgtgaccgacggaggagggggggaggaggaggaagaggaggaagg
tccgtgtgggagcagagggccaaccagctacgcaagcggcgccagatggagagccaggag
gtcctattcggaggcagccccaccgaggacaccactgacacccctaccaccgcctaccgc
gctcccaccctctccccagacgccagccccggtcacctgcccgagtcgcccatgtccggg
atcatgcccatgcctgaacccccgatgtccatcgccatcccgctaccggaacccccagac
tcggagcctgtgcctctgtttacgttagctgaggagagagcggtgaaccatcgccccacc
ggtggggaaaggaggcacagggtggcccggaaatccagacctggccctgggggggcggag
gagggagggacggcgcggcataggaggcaccgtcaccgtgaggcccgggctgaggccaag
agcagagagtccccacatgaggaggtcagtgaatcaggcagccgcgagaggaagatattg
gaagagagggaggagaaggaggagaaagacgagaaggaggtcaaaggagagttcgctgag
gtggagggaggagtgtcaggcaaggatgaaggaggagcccttattatcaacccagagagt
gaagaagagcatctgagggtgtgtattgcagacatccctgagcctcccctatgtgataac
ttccctgagtacctacccccacccctgctggaacctccaccccagatggaggagggtgag
gtgggggagactgggcagtgtgagcccttgtcccaggaccctccagtggagccagcccca
gagcagttcgcagacccctcagagctccaggcagcagcaggggtcagtgactcagagaac
aaccaagcctccctgaaccttgaggaggctaaggagtctgagcaaggcccagacagccag
accagtgtgatcatagagatgtctggagcacagccactgctggaggtcacccccatgaca
gctttacacagcagcaaggaggtggagatgtaccatcatgagaggaaggagaagaaggag
gaggagtcacaggtggagaaggaggaggaggaggaggctagcccgcccaaacctgtacct
cctggcagcatgttcctcttcaaggcctccaacccgatcaggaggatctgtcactatgtg
gtgaccatgcgctactttgagatgaccatcttgctggtgatcgtggctagcagcatcgct
ctggctgctgaagaccctgtgtgcaccaactctgacagaaacagggttctccgttacttt
gattacgtctttactggagtcttcacgtttgaaatgattataaagatgactgacctggga
ctgcttcttcatgatggctcctacttccgtgacctgtggaacattctggacttcattgtg
gtggtgggagctctaatcgcctttgctctgacgaatgtgattgggaacaacaaaggcaga
gacatcaaaaccatcaagtccctcagggttctgagagtcctacgacctctgaagaccatc
aagagactccccaaactcaaggcggtgtttgactgtgtggtgacatctttgaagaacgtc
ttcaacatcctcatcgtctaccagctcttcatgtttatcttcgctgtcatcgccgttcag
ctcttcaagggaaagttcttttattgcactgacagctccatggacacagagaaggagtgc
caaggttactacattgactacgctcgagacaagaaggaagtgaagaagagggagtggaag
aggcatgagttccactatgacaacgtgtgctgggctctgctcactctcttcactgtttca
actggagagggctggccgcaggttctgcagcactctgtggacgtgacagaggaggacatg
ggtccaagtcggggcaacaggatggagatgtccatcttttacgttgtctactttgtggtc
ttccctttcttctttgtcaacatcttcgtcgctctcatcatcattaccttccaggaacag
ggtgataagatgatggaggagtgtagcttggagaagaacgagagggcatgcattgacttt
accatcagtgccaagcccctgacgcgctacatgccccagaacagacagaccttccagtac
cgactgtggcactttgtggcgtcaccatcgtttgagtacacagtgatggtcatgatcgcc
ctcaacactgtggtgctcatgatgaagtactactcagctccagcagcatatgacacggta
ctgaagcacctgaacacagccttcaccgttctcttctccctggagtgtatcctcaagatc
atggcctttggttttgtgaactattttcgagacacttggaacatttttgacttcatcact
gtgctcggcagcatcactgagatcattgtggatttacagtcaataaacacattcaatatg
agtttcctgaagctgttccgggctgccagactgatcaaactgttgaggcagggctacacc
atacgaatcctgctctggacctttgtacaatccttcaaggctcttccttatgtttgtctg
ctcattgccatgctgttcttcatctatgccatcattgggatgcaggtgtttggaaacatc
aaactgaacgatgaaaaccatatcaaccagcacaacaacttcaagaccttctccggtgca
ctgatgcttctcttcaggagtgcgacgggggagtcatggcaggagatcatgctatcgtgt
ctgggggggcaggagtgtgagccagactcctccatggcacccatgaccatgtcccctgac
cacgagggaggctgtggtactgactttgcctactgctactttgtctccttcatcttcttc
agctctttcctgatgctgaatctgtttgtggctgtgatcatggataactttgagtatctg
accagagactcttccatcctgggtcctcatcacctggatgagtttgtccgtgtctgggga
gagtacgaccgtgcagcatgtgggcgtatacactacaccgccatgtatgagatgttgacc
cacatgtctccacccctgggcctggggaagaaatgccccagaggtatggcctacaagagg
ctggtgttgatgaacatgccagtggatgaggacatgtcagtccacttcacctccaccttg
atgtctctcatccgcactgctctggagatcaagatcgcacgaggtcagggaatgagtggg
gaggaccgagtagctctggacactgagctacagaaggagatcagtgtgatatggccgtac
ctcccccagaagaccctggatgtactggtgcccatcaacaaagattctgacatgacagta
ggtaagatatatgcctccatgatgatcatggactacttcaaacagaacaaagccaagaag
ctgagagcacagctggaagcacagaaggccagtctgatgccgttccagcggctggatgcc
tcgaccctctctgaagacattctgtccaatgctcagcccctgccctgcatgccccacagt
gctggctccgccctgaccagaggaggcctggtggcgttgagtcctctctccccccaggac
ctgctcaacatgcagcccatgacctctgacacggacaccagaagccaacactccaggacc
gagatggccagtggctctatgaagcggtcctcgtccgctgtggctgaccagagggtgaat
ggcctgaggcaggaggagaagaaaagtcctgatagactgtacagaccacgccacaagagc
tacaaggctgctgtgtcgcggtcagaaaggaagaggcagttggatacggagaaggagcgc
gggaggtctaaagagcgccgccacctcctctccccagacacgtcccgctgtacctctgag
gagaggagcctgcaaccctcacgctcccctagccgtgagcgcacacaccccctcgacaaa
cagggcaacagctccgacagccccctccccacctctgaatctagtacccctagccgccgc
cctctgtcccagacctcaacacgctcccatccccacatctcctactctcctctggtgtgt
cgcacgcaccctccctcaggggacgatgatgacgacaggggcagcccagagactcagagg
agaggtgaagcctccagagaccgggcagggggagagggacagagtggggcgaggggccgt
cgccaccagcagggctctcccctgcgtcgctacccgtcggagccctacctggccctgcag
gaggacgagcacagtctggaccccaccgggttcatggagacgctgactttcgaggcggcg
gtagccaccagcctgggacgtgctaacacggtcagctccacatccagctccagcttcagc
tccgctcgacggggttccaggagcagctggcaggtccccaatggacacttccggaaacgc
ctggctcagacggtctctgttgcgggttgtgagccactcagcgacacagaagaggacgac
cgctgctag
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integrated database retrieval system
