KEGG   Oncorhynchus kisutch (coho salmon): 109875153
Entry
109875153         CDS       T09179                                 
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC1 isoform X1
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03020  RNA polymerase
oki03420  Nucleotide excision repair
oki04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109875153
  09124 Replication and repair
   03420 Nucleotide excision repair
    109875153
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    109875153
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:oki03021]
    109875153
   03400 DNA repair and recombination proteins [BR:oki03400]
    109875153
Transcription machinery [BR:oki03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     109875153
  RNA polymerase III system
   RNA polymerase III
     109875153
  RNA polymerase I system
   RNA polymerase I
     109875153
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      109875153
SSDB
Motif
Pfam: RNA_pol_Rpb5_N RNA_pol_Rpb5_C
Other DBs
NCBI-GeneID: 109875153
NCBI-ProteinID: XP_020322960
Ensembl: ENSOKIG00005041327
LinkDB
Position
LG30:complement(33098867..33109041)
AA seq 222 aa
MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFKSQFGDKPSEGRPRRTDLTV
LVAHNDDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRACIVVQMGMTPSAKQGPVR
TPLFLSFQSLVDMAPKYILEQFLPQELLINITEHELVPEHIVMTKEELSELLLRYKLKES
QLPRIQAGDPVARYFGLKRGQVVKIIRPSETAGRYITYRLVQ
NT seq 669 nt   +upstreamnt  +downstreamnt
atggatgacgaggaggagacctacagactatggaaaatccgcaaaacaatcatgcagttg
tgccacgacaggggctaccttgtgacgcaggatgagttggaccagactctggacgagttc
aagagccagtttggggacaagccgagtgaagggcgcccacggcggacagatctcactgtg
ctggtcgcccacaacgatgacccaaccgaccagatgttcgtcttctttccagaggagccc
aaggtaggaatcaagactataaagatgtactgccagcgcatgcaggaggagaatatcaca
cgtgcctgcatcgtggtccagatggggatgacgccttccgccaaacaggggccagttagg
actcccttgtttctttcatttcagtcgctagtggacatggcacccaaatacatcctggag
cagtttctaccacaggagctcctcatcaacatcacagagcatgagctggttcctgagcac
atagtgatgacaaaagaagaactgtcagagttgctgcttcgatataaactgaaggagagc
cagctacccaggattcaagctggagaccctgtggccagatactttggactgaaaagagga
caggtagtgaagatcatcagacctagtgagactgctggtagatacatcacctacagactg
gtgcagtaa

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