Oncorhynchus kisutch (coho salmon): 109875372
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Entry
109875372 CDS
T09179
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109875372 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109875372 (wdr33)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
109875372 (wdr33)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_Aladin
ASA1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
DSE1_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
CFAP251_N
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
eIF2A
Beta-prop_Vps41
Beta-prop_SCAP
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_NOL10_N
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
109875372
NCBI-ProteinID:
XP_031665679
Ensembl:
ENSOKIG00005047269
UniProt:
A0A8C7N7K0
LinkDB
All DBs
Position
LG30:complement(1782168..1821036)
Genome browser
AA seq
1155 aa
AA seq
DB search
MATDTSSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRHLENRLWQRDHRDFRAIQPDAGCYNDLVPPVGILSNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWN
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDMEPNSLAAIPGMGIPDQLKAAMEQEASDKETAAEEEMSIPGLDWGIEE
ILQKDQKKVPQKKVPYAKPIPAQFQQAWADNKVPLVPPGGEKKERMDEKKMDGKTNTNPM
MLEQMKMDRMNQMDGNMPPPGGPQGPMPPFPGQGGTMPPPPQGFPQSMPPQQMPHNMGPP
MGPGVMQAPFMRPGQMGPPPGSQHHQGPPQGMMGPPDLHGPQGMQRHPGPHRNMGPQGPH
GMPPGPRGMQGPPGNMQGPPPGGMMGPPPRGQGPPPQGGMMPPQGNMMGPQGPMQGGVGM
GPPMQNPPRTHGNMPGMGGMHGMGNMQGPPPGGMHGPPPGNMQGPPGNMQGPPGNMQGPP
GNMQGPPGNMQGPPSYMQHQVGQNTGPMMHGMGQQGPNGKGDTRGPPNHHMGPPPGGQGQ
GGPGGPDQGSGSYWGDSQQGRRSNDFNEGGQDFHGRGEESWRRGSSQEYQGGHRGGGQGG
GNGGNWGSSEERFPRDGGEFRGRRDDRFGGYGSPGEEFDQRQRDRLPPPRHGQDSDDTYR
GVGQGRPGGRGFPDEFGGQEENFDTSNEMAGGWDNGGRGRPPRGGGPPRGGGGGGGGGGG
GRQGLLPTPDEFPPHYEGGRSQEAWEGGQDQGHEAYREGQRSEHGPLHDSPSPASRERSS
SLQGMDMASLPPRKRPWHDGPGTGDQDSPGAGVEDRTTGRPPQREEGGYGPSTRGGRGGW
RGAPRGAPRGGGRGR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggacaccagctccccgccacggttcttccacatgccgcggtttcagcaccag
gcaccacggcagctcttctacaagcgccccgacttcgcccagcagcaggccatgcagcag
ctcaccttcgacggcaagcgcatgcgtaaggctgtcaaccgcaagaccatcgactacaac
ccctcggtcattagacacctggagaatcgtttgtggcagcgagaccacagagatttccgt
gccatccaaccagatgcaggatgctacaatgatctggttcctcctgtgggcatcttgagt
aaccccatgaatgcagttaccacaaagtttgtccgaacttccacgaacaaagtgaagtgc
cctgtctttgtcataaggtggactcctgaggggaggcgtcttgtcacaggagcctccagt
ggggagttcaccttgtggaacggactcaccttcaactttgagaccatcttacaggcccat
gacagccctgtgcgggccatgacctggtctcacaacgacatgtggatgctgacggctgac
cacggcggctacgtcaagtactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggcgattagagaggccagtttctcacctacggataataaatttgccacttgc
tctgatgacggaaccgtacgcatctgggactttctacgctgtcacgaggagagaattctc
agaggtcatggagctgacgtgaagtgtgtggactggcatcccactaaaggcctggtggtt
tcagggagcaaagatagccagcagccaataaaattctgggatcccaagaccggacagagt
ttggccacacttcacgcccataagaacacggtgatggaggtgaaatggaacctgaacggt
aactggctgctgacagcgtcccgcgaccacctgtgtaagctctttgacatccgcaacctc
aaggaggagctacaggtgttccggggccacaagaaagaggccacagctgtagcgtggcac
cctgtccacgaaggcctgttcgccagcggaggctcggatggatccctcctcttctggaac
gtaggtgtggagaaggaggtgggcggaatggagatggcccatgagggcatgatctggagc
ctggcgtggcacccgctcgggcacatcctctgctcgggatccaacgaccacaccagtaaa
ttctggacgaggaatcgaccaggggacaagatgagggaccgatacaatctgaatttgtta
cctgggatgtcagaggatggagtggaatacgatgacatggagccaaacagcttagctgcc
attcctggtatggggatccccgatcagctcaaagctgccatggaacaagaggcaagcgat
aaagagactgcagccgaggaggagatgagcatcccaggtctggattgggggattgaggag
attttacagaaagaccagaagaaggtgccacagaagaaggtcccctacgccaaacccatc
cctgcccaattccaacaggcctgggcggacaataaggtgcctctcgtgccaccgggagga
gagaagaaagaaaggatggatgagaagaaaatggatgggaagacaaacaccaacccgatg
atgctagagcaaatgaagatggaccgtatgaatcagatggatgggaacatgcctccccca
ggaggtccacaaggacccatgccacctttccctggccagggaggaaccatgcccccacct
cctcagggcttcccccagtccatgccccctcagcagatgccccacaacatggggcccccc
atgggccctggcgtcatgcaggctccgttcatgcgtccgggccagatgggcccccctcca
gggtcccagcaccaccaggggcctcctcagggcatgatgggtccccctgacctccatggg
ccccaaggcatgcagaggcaccccggcccccacagaaacatgggcccccaggggcctcac
ggcatgcctcccggacccagagggatgcagggcccccccggaaacatgcagggcccccca
ccgggaggaatgatggggccccctcctcgaggccaggggcctccaccacaggggggcatg
atgccccctcaggggaatatgatgggcccacagggacccatgcagggtggggtgggaatg
gggcctcccatgcagaaccctcccaggacacacggcaacatgccaggcatggggggcatg
catgggatgggcaacatgcaggggccacccccaggtgggatgcacgggcccccaccgggt
aacatgcaaggaccccccgggaacatgcagggacctcctggaaacatgcaaggaccccca
ggcaatatgcagggcccaccaggcaacatgcaggggcctccatcctacatgcagcaccag
gtgggacaaaacactggccccatgatgcatgggatgggacagcaaggacccaatggcaaa
ggagatacccgagggccccccaaccaccacatgggtcctccacctgggggccaggggcag
ggcggccctgggggccctgaccagggctctggttcttactggggagactctcagcagggg
cgccgatccaacgacttcaatgaaggtggccaggacttccacgggcggggagaggagagc
tggaggagagggtccagccaggaataccagggaggccacagaggaggggggcaagggggg
gggaatgggggaaactggggctcttctgaggaaagattcccccgtgatgggggagagttc
cgaggccgcagggacgacaggtttggtggttatgggagtccaggagaggagtttgaccag
aggcagagagacagactgcctccaccaaggcatggccaggactcagacgacacgtacaga
ggggttggacagggtcgccctggggggagggggttccctgatgagtttggtgggcaggaa
gagaactttgacacctcaaatgagatggccggaggttgggacaacggagggagggggaga
cccccccgaggagggggcccacccagaggaggaggaggtggtggtggtggtggtggtggt
ggacgccagggcttgctccccacccctgatgagttccccccacactatgagggaggcaga
agtcaggaggcctgggagggcgggcaagatcaaggtcacgaggcatacagagaaggccag
cgctccgagcacggcccgctgcatgacagcccgtcccctgccagccgtgagcgctcctcc
tccctgcagggcatggacatggcctcgctgcccccacgcaaacgcccgtggcacgacggc
ccgggcaccggagaccaagactccccgggagcaggggtagaggacaggacaacaggccga
ccgccccagagagaggaaggcggctacggcccctcgacccgcggcggcagagggggctgg
aggggggcgccccgcggggcccccaggggaggagggcgtggccggtag
DBGET
integrated database retrieval system
