KEGG   Oncorhynchus kisutch (coho salmon): 109875382
Entry
109875382         CDS       T09179                                 
Name
(RefSeq) ataxin-2 isoform X1
  KO
K23625  ataxin 2/2L
Organism
oki  Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:oki00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:oki03019]
    109875382
Messenger RNA biogenesis [BR:oki03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     109875382
SSDB
Motif
Pfam: SM-ATX LsmAD PAM2
Other DBs
NCBI-GeneID: 109875382
NCBI-ProteinID: XP_020323318
Ensembl: ENSOKIG00005007210
LinkDB
Position
LG3:complement(12014451..12038867)
AA seq 1074 aa
MSMKQAGGNRKPGSGAASGAGGSGGRQNLGRGRHSAKGPSAAVVSNGVYANMRMVHVLTS
LVGTNCELKVKNGMVYDGVFKTYSPECDLVLDAANIKSPGPSVGLRQEDLVDSIIFKASD
VVVVHFRDVDFNYARKVSTDTDNFTDTAVGGRINGEHKEKDLEPWDGGRQQHMVSGSLES
LDTDVSNGWDPNDMFKYNEEQYGIKSTYDSSLSTYTVALERDNSEEFLKREARAAQLAEE
IEASSTYKSRVALENDERSEEEKYTAVVRGEREQHTLNREKYIPPGQRNREGMSWGPGRQ
NSPRLVQSSSGPPRPGLHDYTPSSGADQRVVNGGATSCPSPSSRYQSGPSPLPPRAATPT
RPPSRPPSRPSRPPSHPSAHGSPAPISTIPSRRMSSEGPPRMSPKTQRTPRTHRVPPGSR
VPPGVDFMPHNAPGEVPVPPATRSSSSGGTWSSVVSGAHRPRSPRQNSMGGASPGPSPQT
GSTPVEPVNTPRSASSPTASPAPNMAAASSAEVKDSRVQATRQNSPTVNKENMKPLESPP
SINRPLSKGPPSMAPDHRKQIDNLKKFSVDFRLQSSSNPDPQFQQMVTKPPQDTGEKSKQ
LPLDKGLEGSEGPVVPARSNKPDSPGAPSPSSTLCPAPEQNRGPDVTSQGVQTSAPNLSG
GAKPEDKEEDEADQMRKSTLNPNAHEFKPRVFTPQPKPATTPTPPRPQGQPSPSIVMQQP
QQVYFPQMYPLTPVSPGVQKSIIWKSPAMYHVQMPHMTLSQSKPYRTVPNMTQQRSDQHH
PQGTPTMMHPAAGPPIVAQSPAYSAQYFTCSPQQFASQQLMPHYQSQAQHVFSPVIQGQA
RMMAPPTHGHPGQLVSSTSQYGEQTHTMYVSQGPMPQQYAHPNTTLHPQPSATPTGQSQQ
GVQHGGNHPAPSPVQQHQAAAAAQALHMGNQPQQQMYQALAPTPPSMTPGPNPQSPQGSF
SSAQQAVYLHPQQMQHGYNPSHMAHMQQVSSTFRSPSLHSEYILYEQAHIQSGMVPSHHG
NPGHPQMMLMATQQQGGPQPQLAQNALNPIPVSSTAHFSYLAHPQVQQHHQQQL
NT seq 3225 nt   +upstreamnt  +downstreamnt
atgtcaatgaagcaggccggtggtaatcgcaaacccggcagtggcgctgcctctggtgcc
gggggaagtggcggacgacagaatttgggcaggggacggcatagtgccaaaggaccttca
gcagccgttgtctctaatggtgtatatgcaaacatgaggatggtccatgtcttgacatca
ttagtgggaaccaattgtgaactgaaagtaaaaaatggaatggtttatgatggagtgttt
aaaacatacagcccagagtgtgacctggttctggatgcggccaacatcaagagtcctggg
cccagtgtgggcctgcgacaggaagacctcgtggacagcattatcttcaaggcttccgat
gtggtggtggtgcacttcagagacgtggacttcaattatgccagaaaagtctctactgac
acagataacttcacggacactgcagtgggcggcagaatcaacggggaacacaaggagaag
gacctggagccgtgggatggagggcggcagcagcacatggtctcaggcagcctggagtct
ctggacacagatgtgtcaaatggctgggacccgaatgacatgttcaagtacaatgaagag
cagtatggcatcaagtccacctatgacagcagcctgtccacctacacggttgccctggag
cgggataactctgaggagtttctgaagcgggaggcgcgagcggcccaactggcagaggag
atcgaggccagctccacctacaagtcccgcgtggccctggagaatgacgagcgcagcgag
gaggagaagtacactgccgtggtgaggggagagagggagcaacacacactcaacagagaa
aagtacattcccccgggtcagaggaacagagaggggatgtcatggggaccgggtcgtcag
aactcccctaggttggtccagagcagcagtggacctccccggccaggtcttcacgactac
acccccagctctggagctgaccagcgggttgtcaacggaggtgccacctcctgcccatcg
ccctcctcccgctaccagtcaggcccctcccctctcccacccagggcggccacgcccacc
cggcctccatccagacccccctcgcggccctcccggcccccgtctcacccctctgctcac
ggctctccagctcccatctccactatacccagtagacgcatgtcctccgaaggccctccc
aggatgtccccaaagacccagcgtacccctcgcacccacagagttccccccgggagtaga
gtccccccgggagtagacttcatgccccacaatgctccaggagaggtgcccgtgcccccg
gctacccgcagcagctcatccggtggcacctggtcttcagtggtcagcggagcacacaga
cctcgatcccctcggcagaacagcatgggcggggcctctcctggtccctcgccccagact
gggtccactcccgtggaacctgttaacacgccaaggtcagcttcctcacctactgctagc
cctgcccccaatatggccgccgcctcctcagcagaggtgaaagattctcgggtccaggcg
acgagacagaactctcctacggtcaacaaagagaacatgaaacccctggagagcccccct
agtatcaacagaccactctctaaaggacccccctccatggcaccagaccacagaaaacaa
atagacaacttaaagaaatttagtgtagattttaggttgcagtccagctctaacccagac
ccacagtttcagcagatggtgactaagcctccgcaggacacgggagagaagtccaagcag
cttcctctggataaggggttggaggggtctgagggccctgtggtccccgccaggagcaac
aagccagacagccctggcgcaccatccccgtcctctaccctctgtcccgccccggaacag
aacagggggcctgacgtaacctcgcagggcgtccagacatctgcacccaacttaagcgga
ggagccaagcctgaagacaaagaagaggatgaggcagatcaaatgagaaagtctactctg
aatcctaatgcccacgagttcaaacccagggtcttcactcctcagccaaagccggccacc
accccgaccccccctcggccccaaggccagcccagcccatctatcgtcatgcagcagcct
caacaggtctactttccccagatgtaccctctgacccctgtcagccctggagtccagaaa
agcattatctggaagtctccagccatgtaccacgtccagatgcctcatatgacgctgagc
cagtccaagccctacagaacagtacccaacatgacccagcagaggtcagaccagcaccac
ccccagggcacgcccaccatgatgcacccggccgcggggccgcccattgtggcccagagc
cctgcctactcagcccagtacttcacgtgtagcccacagcagtttgccagccagcaactg
atgccccactaccagtcacaggcccagcatgtgttcagcccggtgattcagggtcaggcc
aggatgatggcccctcccacccacggccatcctggccagctggtctcttccacctcccag
tatggtgaacagactcacaccatgtacgtgtcgcaaggccccatgccgcagcagtatgcc
caccccaataccacactgcatccccagccctcggccacccccacaggccagtcccagcag
ggcgtgcagcacggtggcaaccacccggcccccagccctgtccagcagcaccaggctgct
gcagctgcccaggccctgcacatgggcaaccagccccagcagcagatgtaccaggccctg
gcccccacccctccctccatgaccccagggcccaacccccagtccccccagggcagcttc
tcctcggcccagcaggcagtctacctccatccccagcagatgcagcacggctacaacccc
tcccacatggcccacatgcagcaggtgagctccaccttcagaagcccttcccttcactct
gagtacatactatatgagcaggcccatatccagtctgggatggtgccgtcccaccatggt
aaccctggccaccctcagatgatgctgatggccacccagcagcaaggtggcccccagccc
caactcgcccagaacgccctcaaccccatcccagtgtcctccactgctcacttctcttac
ttggctcacccccaagtacaacagcaccatcagcagcagctgtag

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