Oncorhynchus kisutch (coho salmon): 109875838
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Entry
109875838 CDS
T09179
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109875838 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109875838 (ttc37)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
109875838 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_17
TPR_19
TPR_14
TPR_8
TPR_11
TPR_9
TPR_12
PPTA
ANAPC8
TPR_15
ANAPC3
TPR_EMC2
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
109875838
NCBI-ProteinID:
XP_031673537
Ensembl:
ENSOKIG00005001473
LinkDB
All DBs
Position
LG3:complement(14818867..14851720)
Genome browser
AA seq
1568 aa
AA seq
DB search
MSNKEVKSALKNARDAIKNKEFKEALKHCKAALKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQTDFKAELPKVYQKLIELYESSDKTKCYEAIR
KLADIFHMEKDYLQVARVWRRLIQLKEGEGANKAELLQLWQQMTCLLSDSMEDHDNETQQ
HLIAAFEKAMVLSDNVPGEDHRKLSADYLKCLSQLSHEECKIKEACESILALYPSQTFPL
EILGAHHLKSGVCSEDAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLK
RMRSSLVGWCSLAQAQLKMHRYSDCATSCSQGLKLGGAGEEALGQKLLRLRLEALVRTGD
EHTADQALESLSQLSDANNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDLAEGLAL
RGLAHIAQGHHQLAEQSLLQAAAQSPACGEYYFVLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMNEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAQEDYV
PALKGLGECLLSLARCLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRARVVVPGPLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPPCLQELEHNSVLLQLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLEN
YALAQHSFIKSVQVEPNNVVAWTNLGALYLKKDSVELSHEAFKIAQSLEPLYVNCWIGQA
LIAEMVGSYDTMDLFRHTTELRTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAV
SAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQATPSVELLAFS
LGSYGRALCNTGQWEEAVHVYSSTPLEVLHDLAGLALAYCRAGLIPESISAYEKALMVTS
TEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLAS
AALTELLKQGRATGAAVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQR
AVLLCPDDPAVWAGLMAACHTENTACSLSGTTPGRRGLEQVLMAVVSEKVRNVEEVEQPL
AQALEGWVLQQAVTGLTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSAG
TALPASVLEQLSSAVSANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLHSG
KMACLLRLALLALSPCMLKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMSA
RETRRLLERLVYFSSQGYPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDSRLLE
FHTRLTSC
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagtaaaatcagctctaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggctctaaaacactgcaaggctgccctgaaactagagaagaacaattac
aatgcctgggtgttcattggtgtggccgcgagcgagctggagcaaccagaccaggcccag
acagcctacaggaaggctctggagctggagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccagacggatttcaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaggcgatcaga
aaactggcagacatcttccatatggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctaacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatggaggatcacgacaatgagactcagcag
cacttaattgcagcctttgagaaggccatggttctctctgacaatgtgcctggcgaggac
catcggaagctctcagctgactacctcaaatgcctttcacaactttcgcatgaggagtgt
aaaattaaagaggcctgtgagtccatattggccctctatccctcacaaacattccctttg
gagatcctcggtgcacatcatcttaagtcaggggtctgcagtgaggacgcgggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agagctctggaggagggaaaatgtgacgactccattaagtatctggcccaaggactgaag
cgaatgcgctccagcttggtgggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtggggctggagaa
gaggcactgggacaaaagctcctgaggctgaggctagaggcccttgtgaggactggggat
gagcacactgcagaccaagccctggagagcctctcacagctttcagatgctaacaatgac
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggccaagttgaccaagtg
ctccaggtgtccacggagctgctgaactctcaccctgacctggctgagggactggcgctg
aggggactggcacacattgcacagggacatcaccaactagcagaacagagcctcctgcag
gctgcagcccagagcccagcctgtggagagtactacttcgtgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaagcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccagggaccagggtcgagccaggggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaatgagggggacatggac
actgctctggctgtgctccagtcagtgatccagagagccacccctggttcagcaaagtgg
gcctggatgagacgaggcctttaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctccatatacagcctctaccagactgctgccatcaaacagaccctg
ggcaagttcaaagaggctgctgcagaatacctgcagatcatagcccaggaggactatgtg
cctgcactcaaaggtcttggggagtgtctgctgtccttggccagatgcctgatggaggac
tatagagatggaggagccatagacctcatccagcaggccatccagtacctcttcagggct
gtagagctgcgtccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcccgcgttgtggtgccaggacccctggccgggtta
caacccccagaccaaggccaccttctcaaccaaggacacaccctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcccccctgccttcaggagctggagcacaactcc
gtgctactgcagctggagaaggccctgcagtgtgtgaagaaggccatcatgttgaacagt
agtaaccatagctactggaacgccctgggagtggtcgccatgagcaaaggacttgagaac
tatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgtt
gcttggacaaacctgggtgctttgtatctgaagaaagacagtgttgagctctcccatgaa
gcctttaagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcc
cttattgcagagatggtgggcagttatgataccatggacctgttcagacacaccacagag
ctcagaacacacacggagggggtaaagggctatgcttactgggtttgtgccactctgctg
gataagagtaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtg
tctgccgctcaggtggctttgagcaagtacacagagcggatccagacagaccctgatgcc
ttcgtcatgctgggtttcctcaacgagcacctgcagctaaagaagcaggcagtgctggct
taccagagagctgtggagttgctgcaggcgacgccttccgtggagttactggccttctcc
ctgggaagctatggccgggccctctgcaacacaggccaatgggaggaggcggtgcacgtt
tactcttccacacctctagaggtgctccacgacttggctggcctggcgctggcctactgc
agagcaggactcatcccagagagcatcagtgcctatgagaaggctctgatggtgacctct
actgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactgggg
aacatggactccgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtgcca
gagtctctgctgtgcctgtgtgctctggggcttgtccatggggacagcaccctggccagc
gcggccctcactgagctgctgaagcagggcagggccactggggctgccgtggagcaacgc
tgtctgctcacctgtaccctgctggccctgcagggcaactacagcgctgtgcagcgagag
gcctccagggccgtccacagtaaccctggaaacccttccctgtgggccctgctttccaga
ctggtgccacagtattaccccaggaaggccaagggaggtgcagtggcaggccacgttgcg
tgtctctccagcatgacccaaggaaagagggcactgctgtacagtggagtgaaccagctg
gcatgtggcaggcactctggagaagatcgcagcaggaacgccctgaagaccatgcagagg
gctgtgctgctctgccccgatgacccggcggtgtgggcggggctaatggctgcttgtcac
acagagaacacagcctgctccctttctggcaccacccctggcagacgaggcttggagcag
gtgctcatggccgtggtgtcagagaaagtacggaatgtggaggaggtggaacagcctctg
gcccaggctctggagggttgggtgctgcagcaggctgtgacaggactgacaagtggaggc
cagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcacccc
gctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctcctgtctagtgccggt
actgccctgccagcttctgtcctggagcagctcagcagtgccgtctcagccaatcacacc
tcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacag
gcagtaatggcctacagacaaagcctgcagctggcctcccagcttgacctccacagtggg
aaaatggcatgtcttctgcgcctagcccttctggccctcagcccctgcatgttgaaagtc
cctggtgatgaatggaaggagctggttctggaggcgaccaccgaggctctgaagctgggc
ccctcccctgtagctctccttgtccaggccctgctacacttcgccaccaagatgtccgcc
agggagacgaggcgtttgttggagaggctggtgtacttctcctcccaaggttacccagag
actgtggcgtgtgtggctcgctggtacctcctacgccacctgcatgccaaagacgacctg
gagctgatggacaccctggtggatgacgccaaagccagtggagacagcagactgctggag
ttccacacacggctcacctcttgctga
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integrated database retrieval system
