Oncorhynchus kisutch (coho salmon): 109875954
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Entry
109875954 CDS
T09179
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109875954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oki03041
]
109875954
03009 Ribosome biogenesis [BR:
oki03009
]
109875954
Enzymes [BR:
oki01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109875954
Spliceosome [BR:
oki03041
]
Complex A
U1 snRNP components
U1 related factors
109875954
Complex B
109875954
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
Helicases
109875954
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
109875954
NCBI-ProteinID:
XP_020323999
Ensembl:
ENSOKIG00005000588
LinkDB
All DBs
Position
LG1:64179695..64188344
Genome browser
AA seq
633 aa
AA seq
DB search
MPGFSDRDRGRDRGYGAAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKDVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGGGGGYRDKDSDRGFGGGPKSAFGTKTQN
GVGYGGSTYDKGASSGGSYGNSYGSNGQASFGATNQVGAFGGQNFQAPPQFGAAQAAAPN
GMGRPPFPFNPQAQQSQQPPPMVPYSMPPPFPQ
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggcagagacagggggtatggagctgcacctcgt
tttggaggtggcggtggtggcagtaggggtggaccccctcaggggaaatttggcaaccca
ggtgaaaggctgcgcaaaaaacactggaacatggatgagctcccaaagttcgagaagaac
ttctaccaggagcatccggatgtgacccgcagaccacctcaagaggtggagaactacctg
cgaagtaaagacgtaacagtgaaaggcagagactgccccaagcccatgatgaagtttcac
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctccggtaaaacccttgcttatctgctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggctcagcaggtgcagcaggttgccgctgagtacggcagggcctcccgcctgaag
tcagtctgcgtctatggtggagcccccaaaggaccccagattcgggaccttgagaggggt
gttgagatctgtattgccaccccagggcgtctcatagacttcctggaggctgggaagacc
aaccttcgcaggtgtacttaccttgtgctggacgaggctgaccgtatgctggacatgggc
ttcgagccccaaatacgcaaaattgtggaccaaattcgaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgccagctggctgaggacttcctgaagcagtac
gtccaaatcaacgtgggcgcgctgcagctcagcgctaaccacaacatcctgcagatagtg
gacgtgtgcaacgacggcgagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagaccattatctttaccgagaccaagagacgctgcgacgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
accgacgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acaggcaccgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagctcctccagatggcagaggcc
agaggaggtcgtggcggggggggaagaggtggctttagggatgaccggcgagataggtat
tctggggggaggagttacggtggtggtggtggtggtggtggtggtggttacagggacaag
gatagcgacagggggttcggtgggggaccaaagagtgccttcggcacaaaaacccaaaac
ggagtgggctacgggggtagcacctatgacaagggtgctagctctggcggtagctacggc
aacagctacggcagcaacggacaggctagctttggcgccaccaaccaggtgggtgcgttc
ggaggccagaacttccaggcccctccacagtttggagctgcgcaggcggctgccccaaac
ggcatgggtcgcccgccattcccctttaacccacaggcacagcagtcccaacaaccccca
cccatggtaccctattctatgcctccccctttcccacagtaa
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