Oncorhynchus kisutch (coho salmon): 109877107
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Entry
109877107 CDS
T09179
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109877107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oki03009
]
109877107
Ribosome biogenesis [BR:
oki03009
]
Eukaryotic type
Pre-60S particles
RNases
109877107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Zwint
Motif
Other DBs
NCBI-GeneID:
109877107
NCBI-ProteinID:
XP_020325023
LinkDB
All DBs
Position
LG3:complement(20590870..20601720)
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AA seq
1217 aa
AA seq
DB search
MDILPCGNTNKNTPSSNDSCVTLMQWNRVMTKEWYSNRKGRDHCKRPHCLYKHDKDDRGM
FDNTLHGSPVTTAGVWKTHSTSINGVPQVNEAKDPCLLELERINKEIETVKNEVEKEQRR
LSRYQTVQVDSERTGSKKVLIAKSETPGKDLNGNSVKSKHRQSTTVYSPARRKYVVDNSK
PRTDLEYDPLSNFSASLRSSGCSEYKPGNEQKVRSGQGVKRTRENVCKEDQTKPPFQEFT
ASPASSNKLVDDSEEEEGVLIIDIPPLESDRKKCRAQKPCKINTNQSQEIKEEVHPVFVP
TVAHAPLSIPLPVSTPGPEVVEVLSPPAVSEIVKDDNLNTYGLSSVSASRGNDGEPSAES
VFDDLSKCLENLRSESERIVCYQEAEVTAESNCVPEPETHFESQSSLQTRHHNEPVKTDV
NLLMAEPGLLERELAYNCVENSNHLQPNEVSYGHISSLPHNVLVPPSVYSPHKLPIETQR
SQQPVAQSSAQSYWSPVQSVSSVPCLQKIPGQTPALDFSLPSPVPGANFVEQAATTVGFT
QCQLLYGPTASGTNGVELQSAPLEQPTVEAMNEHIVIDSNSEELEYSELSDSDTMEECYR
IFMEEANKGEEGSTDQACTPVGAVDVETPGLAVKPKPLPGPRKRVAHVSRYTEPPVGKSK
AQVIVPFRGGAPQLSNPSKIQQLQQRASVLSAALKGGQAFISNSQRKMVMLPSPAHQASH
QATHHPVQYLIHQPTHQTTMQNSCVNVIPVGTAIQVGNNLHFILPEGSYTLPITPANSPV
TPVHTPVHTPVTPVPVQPQPTAYIPAKPIPTKRKAKMRPEVSAKVPHDVRQRYVNLFVEE
FLKTSVTVQDAFEKALAEEKTVYDRSINKLKYLSVAVNALKRLKNQSSVSVKAGNETNVQ
LSKGNIPLNEKALWGNGDVALYDSLKEHILSEEILMENNYPLQHPEKSGSAILYREDYKK
GITDPLKRICCRCGATYSVNQVGKHTRKEECNYHYGKGVEKKVPGGVETRYSCCEGVAGC
PGCQVFKLHVHDAVSLDGFVSTLPRPGSDKGCPGVFSVDCEMCYTTQGLELARVTVVNSS
LQVIYDTFVKPDNDVIDYNTRFSGINEADVKGTSSSIRDVQETLLSFVNAETILIGYGLE
SDLCALKLLHGTVVDTSVSFPHRLGLPHKMTLHNLTADYLRRIIQESVGGHDSAEDAAAC
MELMLWKVKEDGKTKRW
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atggatatattgccgtgtgggaacactaacaagaacacgccttcgtccaatgactcttgt
gtaacattaatgcaatggaacagagtcatgaccaaggagtggtacagtaaccgaaaagga
cgtgaccactgtaagcggccccactgtctgtacaagcatgacaaagacgaccgaggaatg
tttgacaacaccctgcatgggtcaccggtaacaacagcaggtgtttggaaaactcattcc
acttccattaatggagtcccacaggtcaatgaagccaaagacccttgccttttggagttg
gagaggatcaacaaagaaattgagactgttaagaatgaggttgagaaggagcaaaggaga
ttatctcgttaccaaactgtgcaggtggacagtgaaagaacagggtccaagaaagtcttg
attgccaaatctgaaacaccaggcaaagatctgaatggaaatagtgtaaagtctaaacac
aggcagtcaactacagtctattctcctgcccggaggaagtatgtggttgacaactccaaa
cccaggactgatttggaatacgaccccttgtccaacttctcagcttctttgcgatctagt
ggttgttctgagtacaaaccaggtaatgagcagaaagtgagaagtgggcaaggtgtgaag
aggactagagagaatgtttgtaaggaggaccaaactaagccaccctttcaagagttcact
gcctcaccagctagtagtaacaagctagttgatgactctgaagaagaagaaggggtcctc
atcattgatattccacctctggagagcgatagaaagaagtgtcgggctcagaagccctgt
aagatcaacacaaaccaatcacaggaaatcaaagaggaagtccaccctgtttttgttcct
actgtggctcatgctccactcagtattccacttcctgtgtccactcctggtcctgaagta
gtcgaagtcctatccccacctgcagtgtctgagattgtgaaagatgataacctcaacact
tatggcctatctagtgtttccgctagtcggggaaatgatggtgaacccagtgctgagagt
gtattcgatgacttgtccaaatgcttggaaaacctgaggagtgaaagtgagagaatagtt
tgttaccaagaggctgaagtcactgcggaaagcaactgtgtcccagaacctgagactcat
tttgagagtcaatcatccttacagacacgccaccataatgagccagttaagactgatgtc
aacttactgatggcagagcctggattgcttgaacgtgagcttgcctacaactgtgttgag
aacagtaaccatcttcaacccaatgaagtctcatatggacatatatcttcactacctcat
aatgttttagtccctccctctgtctactccccccataaactccccattgagacccagaga
agtcagcagccagtagcacagagttctgctcagagttactggtcacctgtacagagtgta
tcatcagtgccatgtctgcagaaaataccaggccaaacgccagcgcttgatttctccctg
cctagtccagttccgggagcaaactttgtagagcaagcggccactactgtgggtttcacc
caatgccagctgttatatgggccaactgcgtcagggactaatggagtagaattacaatct
gctcctttagagcagcctactgtggaagcaatgaatgaacacattgttattgattcaaat
tctgaggagctcgagtattcagagttatctgatagtgacacaatggaggaatgctatcgt
atcttcatggaggaagccaacaagggtgaagagggatcgacagaccaggcttgtacacct
gtaggagctgtggatgtggagacaccagggttagcagtgaaacccaaaccgttgccagga
cccaggaagagggtggcccatgtgtccagatatactgagccaccggtgggcaaaagcaaa
gcccaggtgatcgttcctttccgtggaggagccccccagttgtccaacccctctaagatc
cagcagctgcagcagagggcctccgttttgtccgctgctctgaaaggaggccaggcgttc
atctccaactcacagagaaaaatggtgatgctgccttctcctgctcatcaggccagtcat
caggccacccaccatccagttcaatacctcattcaccagccaactcaccaaactactatg
caaaactcatgtgtgaacgtcatacctgtgggaacagccatccaggtgggcaacaacctg
cacttcatcctcccagagggaagctacactctgcccatcactccagctaattctccagtc
accccggtccataccccagtccatactccagttacacctgttcctgtacaacctcagcct
actgcctatatccctgctaagcccattcctaccaaacgtaaggccaagatgcgtcctgag
gtcagcgccaaagtcccacatgacgtacggcagcgctatgtaaacctgtttgtagaggaa
ttcctcaaaacgtccgtcactgtacaagatgcttttgaaaaggctcttgctgaggagaag
actgtgtatgatcgcagcatcaacaaactcaagtatctgagtgttgcagtgaatgcactg
aagaggctgaagaaccagagctccgtctctgtcaaagctggaaatgaaactaatgtccag
ttgtccaaaggaaatattccactcaatgaaaaagcactttggggaaatggagatgttgca
ttgtatgacagtttgaaggagcacattctgtcagaggagatattgatggagaataactat
cctcttcagcacccagagaaatctggcagtgccatattgtaccgtgaagactataaaaag
ggaatcactgatcctttgaagaggatttgctgtcggtgtggggccacttactctgtgaac
caagtgggaaagcacactcgcaaggaggagtgcaactaccactatgggaaaggagttgag
aaaaaggttccaggtggagtggaaacacgctacagctgctgtgaaggtgtggctgggtgt
cctggatgccaagtcttcaagctgcatgtccatgatgcagttagcctggatggctttgtc
agtacccttccaaggcctggctctgacaagggatgcccgggtgtgttttcagtcgactgt
gaaatgtgctataccactcaaggtctggagctggccagagtgactgttgtcaactccagt
ttgcaggtcatctatgacacctttgtgaaacctgataatgatgtcattgactacaacacc
aggttttcaggcatcaatgaagctgatgtgaaaggaacaagctcgtccatcagagacgtt
caggagactctactgagctttgtcaatgctgagactatactgattggctacggcttggaa
tctgacctctgtgcactgaagctgctccatggcaccgtggtggacacctctgtgtcgttc
ccccaccgcctgggcctgcctcataagatgaccctccacaacctgacagcagactacctc
aggaggatcatccaggagagtgtgggtggtcatgactcagcagaagatgctgctgcctgt
atggagctcatgctgtggaaggtcaaagaagatggcaaaactaaacgatggtga
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