Oncorhynchus kisutch (coho salmon): 109877878
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Entry
109877878 CDS
T09179
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109877878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109877878
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109877878
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109877878
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109877878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
109877878
NCBI-ProteinID:
XP_031672647
Ensembl:
ENSOKIG00005001580
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All DBs
Position
LG3:6466331..6486902
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AA seq
553 aa
AA seq
DB search
MFLRLTGMPKGNYDPPDPRRLYTIMSAEEVANGKKSHWAELEISGQVRSLSCSLWTLTHL
TALHINDNNLSRIPPDIGKLPHLIYLNLSSNKLRSLPAELGNMVCLRELLINNNLLRVLP
YELGRLFQLQSLGLKGNPLSQDILNLYQESDGTRKLLNYMLDNLAVHPEQLPQRPWITLK
ERDPMTPTAMFTVMCYNVLCDKYAMRQLYGYCPSWALNWEYRKKGIMEEITHCDTDIISL
QEVETEQYHALFLETLKERGYHGYFCPKSRAKLVSEQERKHVYGCAVFFKFTLVQKHTVE
FNQVAMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDMFSGGEKPPLQEKQMILVANAHMH
WDPEFCDVKLIQTMMFLSELKSIAERHQSSVGTGTPTSDPASIPIVFCADLNSLPDSGVV
EYLSNGDVAENHKDFRELRYNEALTNFSCQGNGSITHSFQLKSAYQGSLMSYTNYTYDFK
GVIDYIFFSKTHMSVAGLLGPLESRWLTDNNITGCPHPHIPSDHFSLLAQLELHPPLTTS
SSCLNGLHLPVHR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcagattaacaggtatgccaaagggaaactatgatcccccggatcctcgtcga
ctatacaccataatgtcagccgaggaggtagccaacgggaaaaagtcacactgggctgag
ttggagatatcaggtcaggtcaggagtctgagctgctctctgtggaccctcactcacttg
acggctctacatatcaacgacaacaatctgagtcgcatcccgcctgacatcggcaagctg
ccacacctcatctacttgaacctgtcctccaataagctccggagcctgcccgccgaactc
ggaaacatggtgtgtctcagagaattgcttataaacaacaatcttttacgagttttacct
tatgaactcgggcggcttttccagttacaatccctggggttaaaaggtaaccctttgtcc
caagacattctcaacctgtaccaggaatcagacgggaccagaaaactgttgaactacatg
ctcgacaatctagcagtgcacccagaacaactaccccagagaccttggatcaccttgaag
gagcgagacccaatgaccccaacagccatgttcacagtgatgtgttacaacgtgctgtgc
gataagtacgcaatgcgtcagctttacggctactgtccctcctgggccctcaactgggag
tacaggaagaagggcatcatggaggagattacacactgtgacactgacatcatcagtcta
caggaggtggagacggagcagtatcacgctctgtttctggagacactgaaggagcgtggg
taccacgggtacttctgcccaaagtctcgtgccaaactggtctcagaacaggagaggaaa
cacgtgtatgggtgtgccgtgttcttcaaatttactctggtgcagaaacacactgtggag
ttcaaccaggttgccatggcgaactctgagggttcagaggtcatgttgaacagggtcatg
accaaggacaacatcggggtcgctgtcctgctggaggtcaacaaggacatgttctctggt
ggagagaaacctccgctgcaggagaaacagatgatcctggtggccaacgctcacatgcac
tgggacccggagttctgtgacgtcaagctgatccagaccatgatgttcctgtctgagtta
aagagcatcgctgaaaggcaccagagctccgtgggaacaggtaccccgacctctgaccca
gcctccatccctatcgtgttctgtgctgacctcaactccctgcccgactctggagtagtg
gagtacctgagtaacggtgatgtagcagagaatcacaaggacttcagagagctgcgctac
aacgaggctctcaccaacttcagctgccaaggcaacggcagcatcactcacagcttccag
ctgaagagcgcctaccagggcagcctcatgtcttacaccaactacacctatgactttaag
ggcgtaatcgactacatcttcttctccaagactcacatgtctgtagccgggttactcggt
cccctggagtctcggtggttaacggacaacaacatcaccggctgtccccacccccacatc
ccctctgaccacttctctctgctcgcccagctggagctccacccgcccctcaccacctcc
tcctcctgcctcaacggcctgcacctgcctgtccacaggtag
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