Oncorhynchus kisutch (coho salmon): 109878142
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Entry
109878142 CDS
T09179
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109878142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oki04131
]
109878142
Membrane trafficking [BR:
oki04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109878142
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
VPS3_N
zf-Vps39_C
TPR_Vps41
Clathrin
Motif
Other DBs
NCBI-GeneID:
109878142
NCBI-ProteinID:
XP_020325949
Ensembl:
ENSOKIG00005011095
LinkDB
All DBs
Position
LG14:complement(42199904..42209806)
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AA seq
843 aa
AA seq
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MSLKAFTQVQVYEKLPNPKEKDKFSIHSLECYDRNIYIGTKDSLVQHLILPSSSDMKDSS
QSPREGRMKLLGSSSPVTQLRVIPVLNHLLVLWDRSVSALNMFSLEPLPFLKRIQHVSFF
EVCESALSTSSQSVCVELVTASSRRRVVQIHVVGVERWDCVKEVSLPQDPVALAVDDNTL
CVATSDRYFLHDHKSGSTVDLFPHNLSRQNIIVSTAGKGEFLLNGPGSLGMFVMKNGICQ
RPPVQWPEELLAAVVCYPYILALQPQALYVYSMVDQHLKQTVPLLRARGLLSTTEGVYIF
MEREILGLSHVPFEEQIQTLVRYERVEEALGLLGGIQAHLPQVSYKELHKVITCMDGFIK
FYQGSFSEAKELFIKGELDPREIISLYPEMEPLCETFHSQLVKVNNAKELLALRQEDRTT
FQQYLDFLGDFLRVVRGTKQGVECSEDIDTAQLRMYTEQGDRVELDALVSSPNSCSIDKC
VPLLELHKRFFTLGLLYQSHGHHIKAIQTWVKITDGKYEESSCSNVYEHIVRTLSRLKQR
DVVWTFADWALQRNQEVGIQIFTKRDPEDQDTFAQEDVLTFLKKYSLALMLFLEFLVHDL
KSKEEKHHTLLATAYVTHILGALQNGKGTDSDGGMTRDKLQQLLWQSSLYDTMTVHEAIQ
PTVLHTEQAILLGRAGDHYQALQTLVHKERDLQVAGAYCRRAAGWQERELEHTLFLTLLR
IYLGSNELASAAVDLLNANAAAFDLDTVLQVLPDSWSVQLVSQFLLGSLRGTFHQRRMAG
VERGLAQVELLRHKYTWAQASKRMLKLDKGLVCNTCQKDLTEPEFVCSLRGELVHTNCGS
YTE
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgaaagccttcactcaagtgcaagtctatgaaaaacttcccaaccctaaagaa
aaagacaaattcagcatccatagcctggagtgttatgacagaaatatatacattggaacc
aaagactcattggtccaacaccttatcctacccagtagcagtgacatgaaggactccagt
caaagtcctcgggaggggaggatgaaactgctaggctcaagcagcccagtcacccaatta
agggtgataccagttctcaatcaccttctggttctgtgggatcgttccgttagcgccctc
aacatgttctccctagaaccccttcctttcctgaagcggatccaacacgtgtctttcttt
gaggtgtgtgaatcggcactgtcaacctcatcgcagtctgtgtgtgtggagctggtgaca
gcctctagcaggcgcagagtggtccagatccatgttgtgggggtggagagatgggattgt
gttaaagaggtgtctctaccccaggaccctgtggccttagctgtggatgataacactttg
tgtgtggccaccagtgacaggtatttcctccacgaccacaagagtggaagcaccgttgat
ctcttccctcacaacctgagcaggcagaatatcattgtgagcaccgcaggaaaaggggaa
ttccttttaaatggccccggctccttgggcatgtttgtcatgaagaatggcatatgccag
cggcctccagtgcagtggcctgaggagctgttggcagcggtggtgtgttacccttacatc
ctggccctgcagcctcaggctctctatgtctacagtatggtggatcagcatctcaaacag
actgtgcctctgcttagggccaggggcctactctcaacaacagagggtgtgtacattttt
atggagagagagatcctcggtttgtcccatgtaccatttgaggagcagatccaaaccctg
gtaaggtatgagagagtggaggaggcattgggactgcttggtggaattcaagctcatctt
ccacaggtttcttacaaggagctgcataaggtcatcacttgcatggatggattcattaaa
ttctaccaggggtctttttcagaggccaaagaactttttataaaaggggagttggaccct
agagaaatcatcagcttgtatccagagatggaacctctctgtgagacctttcattcccag
ctggtcaaagtgaacaatgcaaaggagctcttggcactacggcaagaggacaggaccaca
tttcaacagtatctagacttcctgggcgatttcctaagggtggttcgagggacgaagcag
ggagttgagtgcagtgaggatatcgatactgcacaactgagaatgtacacagagcaaggt
gacagagtagagctggatgcacttgtgtcctctcccaattcctgctcaatcgacaaatgt
gtgcctctccttgagctgcacaagagatttttcacacttggattactctaccagagtcat
ggtcaccatatcaaagcaatccagacttgggtgaaaattactgatgggaaatatgaagag
agctcatgttcaaatgtgtatgagcacattgtgagaactctcagtcgactaaaacagaga
gatgtcgtttggacgtttgcagattgggctctccaaagaaaccaggaggttggaatacag
attttcacaaaaagagatccagaagaccaagacacatttgcacaggaggatgtcctcact
tttttaaagaagtactctctagctttgatgttgttcctggaatttctggtccatgatttg
aaaagcaaggaggagaagcatcatacccttttggccaccgcatatgtcacccatatactc
ggagccttacagaatggaaagggtacggattcagatggaggaatgaccagagataaactg
caacagttgctgtggcagtcttccctctatgacaccatgacagtacatgaggccatccag
ccgacagtcctgcacaccgagcaggccatcctgctcgggagagctggtgaccactatcag
gccctacagaccttggtccacaaagagagagacctccaggttgcaggggcctactgcagg
agggctgctgggtggcaggaaagggaactggaacacacccttttcctcaccctgctccgg
atctacctgggctccaatgagctagcgagtgcggccgtggacctgttgaatgccaacgct
gctgcttttgacctggatacagtcctccaggttctgccggattcctggtctgttcagctg
gtctcccagttcctattggggtcccttcgagggactttccatcaaagacgaatggcaggg
gtagagaggggcctggcccaggtagaactccttagacacaagtacacttgggcccaagcc
tcaaaaagaatgctgaaattggataagggtctggtgtgcaatacctgccagaaggatctc
acagagccagagtttgtgtgtagtcttaggggtgagctggttcacactaactgtggaagc
tacacagagtag
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